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troubles with generating Philosopher report .meta/pep.bin #496

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nissrine895 opened this issue Jun 4, 2024 · 0 comments
Open

troubles with generating Philosopher report .meta/pep.bin #496

nissrine895 opened this issue Jun 4, 2024 · 0 comments

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@nissrine895
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nissrine895 commented Jun 4, 2024

Hi ,I used MSfragger v_3.8 before and I put the mzml files and pepxml files in the same folder I used philosopher and all the following command run perfectly but the trouble that I have is generating a report I keep getting the error message

`#!/bin/bash
cd /home/nissrine/Protein_extraction_methods_test/mzML
philosopher workspace --init
philosopher peptideprophet --decoy rev_ --database /home/nissrine/Protein_extraction_methods_test/mzML/2024-05-27-decoys-contam-uniprotkb_reviewed_true_AND_t>
philosopher proteinprophet *.pep.xml
philosopher report

#The error

INFO[10:08:04] Executing Report v5.1.0
INFO[10:08:04] Creating reports
ERRO[10:08:04] Cannot read file. open .meta/pep.bin: no such file or directory

@nissrine895 nissrine895 changed the title I used MSfragger v_3.8 before and I put the mzml files and pepxml files in the same folder I used philosopher and all the following command run perfectly but the trouble that I have is generating a report I keep getting the error message troubles with generating Philosopher report .meta/pep.bin Jun 4, 2024
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