From 8f9ae54f7103a0979347594dd3284529bbc8d0f4 Mon Sep 17 00:00:00 2001
From: Sharon Yates <30626642+sharoncy@users.noreply.github.com>
Date: Thu, 21 Nov 2024 15:15:47 +0100
Subject: [PATCH] Update README.md

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 # PyNutil
-PyNutil is currently under development.
+PyNutil is under development. It currently has known bugs (errors in region area calculations) - do not use. 
 
-PyNutil is a Python library for brain-wide quantification and spatial analysis of features in serial section images from mouse and rat brain . It aims to replicate the Quantifier feature of the Nutil software (RRID: SCR_017183). It builds on registration to a standardised reference atlas with the QuickNII (RRID:SCR_016854) and VisuAlign software (RRID:SCR_017978) and feature extraction by segmentation with an image analysis software such as ilastik (RRID:SCR_015246). 
+PyNutil is a Python library for brain-wide quantification and spatial analysis of features in serial section images from mouse and rat brain. It aims to replicate the Quantifier feature of the Nutil software (RRID: SCR_017183). It builds on registration to a standardised reference atlas with the QuickNII (RRID:SCR_016854) and VisuAlign software (RRID:SCR_017978) and feature extraction by segmentation with an image analysis software such as ilastik (RRID:SCR_015246). 
 
 For more information about the QUINT workflow:
 https://quint-workflow.readthedocs.io/en/latest/