New test dataset - PyNutil nonlinear

Perform key test
Neural-Systems-at-UIO · Sep 12, 2024 · a24b6f8 · a24b6f8
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diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s001_centroids.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s001_centroids.json
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+[{"idx": 0, "count": 6, "name": "Caudoputamen", "triplets": [148.2227248840332, 361.8014440433213, 169.7090739071843, 300.2227248840332, 361.8014440433213, 169.7090739071843, 148.2227248840332, 361.8014440433213, 137.7090739071843, 300.2227248840332, 361.8014440433213, 137.7090739071843, 148.2227248840332, 361.8014440433213, 105.70907390718429, 300.2227248840332, 361.8014440433213, 105.70907390718429], "r": 152, "g": 214, "b": 249}]
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s001_pixels.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s001_pixels.json
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s002_centroids.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s002_centroids.json
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diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s002_pixels.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s002_pixels.json
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s003_centroids.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s003_centroids.json
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+[{"idx": 0, "count": 1, "name": "Reticular nucleus of the thalamus", "triplets": [291.2481835655077, 275.6299638989171, 124.30589181057096], "r": 255, "g": 144, "b": 159}, {"idx": 1, "count": 1, "name": "fimbria", "triplets": [303.3984868269286, 275.6299638989171, 195.24984904125864], "r": 204, "g": 204, "b": 204}, {"idx": 2, "count": 3, "name": "Caudoputamen", "triplets": [115.13079848162462, 275.6299638989171, 187.73623554444296, 104.81122452729532, 275.6299638989171, 155.4062851594552, 106.47906929935854, 275.6299638989171, 130.5226916764055], "r": 152, "g": 214, "b": 249}, {"idx": 3, "count": 1, "name": "Ventral posterolateral nucleus of the thalamus", "triplets": [296.5436948351808, 275.6299638989171, 154.02615096124885], "r": 255, "g": 128, "b": 132}]
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s003_pixels.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s003_pixels.json
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s004_centroids.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s004_centroids.json
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+[{"idx": 0, "count": 2, "name": "Lateral posterior nucleus of the thalamus", "triplets": [173.16480676444618, 232.54422382671487, 201.6785197661734, 289.2872216125601, 232.54422382671487, 200.14874063235155], "r": 255, "g": 144, "b": 159}, {"idx": 1, "count": 2, "name": "Ventral posterolateral nucleus of the thalamus", "triplets": [151.80258120463463, 232.54422382671487, 139.26497372118678, 302.36268953893995, 232.54422382671487, 138.1392947451368], "r": 255, "g": 128, "b": 132}, {"idx": 2, "count": 2, "name": "Posterior complex of the thalamus", "triplets": [166.3575983200482, 232.54422382671487, 170.18405336467325, 293.4247604421047, 232.54422382671487, 170.71905167020356], "r": 255, "g": 144, "b": 159}]
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s004_pixels.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s004_pixels.json
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s005_centroids.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s005_centroids.json
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+[{"idx": 0, "count": 3, "name": "Field CA1", "triplets": [379.6554846650004, 189.45848375451277, 178.6886567538774, 378.25719613455095, 189.45848375451277, 146.9326584442673, 366.9803100259986, 189.45848375451277, 116.90047782696456], "r": 126, "g": 208, "b": 75}, {"idx": 1, "count": 3, "name": "Field CA3", "triplets": [107.79590535488221, 189.45848375451277, 174.98837715036564, 113.49628302707791, 189.45848375451277, 146.05184414020994, 121.16670595345234, 189.45848375451277, 121.66252407251372], "r": 126, "g": 208, "b": 75}]
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s005_pixels.json b/tests/outputs/PyNutil_nonlinear_noflat/per_section_meshview/test_s005_pixels.json
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s001.csv b/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s001.csv
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s002.csv b/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s002.csv
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s003.csv b/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s003.csv
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s004.csv b/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s004.csv
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s005.csv b/tests/outputs/PyNutil_nonlinear_noflat/per_section_reports/test_s005.csv
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/whole_series_meshview/objects_meshview.json b/tests/outputs/PyNutil_nonlinear_noflat/whole_series_meshview/objects_meshview.json
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+[{"idx": 0, "count": 2, "name": "Lateral posterior nucleus of the thalamus", "triplets": [173.16480676444618, 232.54422382671487, 201.6785197661734, 289.2872216125601, 232.54422382671487, 200.14874063235155], "r": 255, "g": 144, "b": 159}, {"idx": 1, "count": 1, "name": "Reticular nucleus of the thalamus", "triplets": [291.2481835655077, 275.6299638989171, 124.30589181057096], "r": 255, "g": 144, "b": 159}, {"idx": 2, "count": 3, "name": "Field CA1", "triplets": [379.6554846650004, 189.45848375451277, 178.6886567538774, 378.25719613455095, 189.45848375451277, 146.9326584442673, 366.9803100259986, 189.45848375451277, 116.90047782696456], "r": 126, "g": 208, "b": 75}, {"idx": 3, "count": 3, "name": "Field CA3", "triplets": [107.79590535488221, 189.45848375451277, 174.98837715036564, 113.49628302707791, 189.45848375451277, 146.05184414020994, 121.16670595345234, 189.45848375451277, 121.66252407251372], "r": 126, "g": 208, "b": 75}, {"idx": 4, "count": 1, "name": "fimbria", "triplets": [303.3984868269286, 275.6299638989171, 195.24984904125864], "r": 204, "g": 204, "b": 204}, {"idx": 5, "count": 15, "name": "Caudoputamen", "triplets": [148.2227248840332, 361.8014440433213, 169.7090739071843, 300.2227248840332, 361.8014440433213, 169.7090739071843, 148.2227248840332, 361.8014440433213, 137.7090739071843, 300.2227248840332, 361.8014440433213, 137.7090739071843, 148.2227248840332, 361.8014440433213, 105.70907390718429, 300.2227248840332, 361.8014440433213, 105.70907390718429, 142.76906805975435, 318.7157039711191, 178.28920182898295, 315.90068122977675, 318.7157039711191, 177.60092535146066, 146.43721749792098, 318.7157039711191, 150.18435737841043, 315.90068122977675, 318.7157039711191, 145.60092535146066, 150.10536693608773, 318.7157039711191, 122.07951292783781, 315.90068122977675, 318.7157039711191, 113.60092535146066, 115.13079848162462, 275.6299638989171, 187.73623554444296, 104.81122452729532, 275.6299638989171, 155.4062851594552, 106.47906929935854, 275.6299638989171, 130.5226916764055], "r": 152, "g": 214, "b": 249}, {"idx": 6, "count": 3, "name": "Ventral posterolateral nucleus of the thalamus", "triplets": [296.5436948351808, 275.6299638989171, 154.02615096124885, 151.80258120463463, 232.54422382671487, 139.26497372118678, 302.36268953893995, 232.54422382671487, 138.1392947451368], "r": 255, "g": 128, "b": 132}, {"idx": 7, "count": 2, "name": "Posterior complex of the thalamus", "triplets": [166.3575983200482, 232.54422382671487, 170.18405336467325, 293.4247604421047, 232.54422382671487, 170.71905167020356], "r": 255, "g": 144, "b": 159}]
diff --git a/tests/outputs/PyNutil_nonlinear_noflat/whole_series_meshview/pixels_meshview.json b/tests/outputs/PyNutil_nonlinear_noflat/whole_series_meshview/pixels_meshview.json
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		[{"idx": 0, "count": 6, "name": "Caudoputamen", "triplets": [148.2227248840332, 361.8014440433213, 169.7090739071843, 300.2227248840332, 361.8014440433213, 169.7090739071843, 148.2227248840332, 361.8014440433213, 137.7090739071843, 300.2227248840332, 361.8014440433213, 137.7090739071843, 148.2227248840332, 361.8014440433213, 105.70907390718429, 300.2227248840332, 361.8014440433213, 105.70907390718429], "r": 152, "g": 214, "b": 249}]
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		[{"idx": 0, "count": 1, "name": "Reticular nucleus of the thalamus", "triplets": [291.2481835655077, 275.6299638989171, 124.30589181057096], "r": 255, "g": 144, "b": 159}, {"idx": 1, "count": 1, "name": "fimbria", "triplets": [303.3984868269286, 275.6299638989171, 195.24984904125864], "r": 204, "g": 204, "b": 204}, {"idx": 2, "count": 3, "name": "Caudoputamen", "triplets": [115.13079848162462, 275.6299638989171, 187.73623554444296, 104.81122452729532, 275.6299638989171, 155.4062851594552, 106.47906929935854, 275.6299638989171, 130.5226916764055], "r": 152, "g": 214, "b": 249}, {"idx": 3, "count": 1, "name": "Ventral posterolateral nucleus of the thalamus", "triplets": [296.5436948351808, 275.6299638989171, 154.02615096124885], "r": 255, "g": 128, "b": 132}]
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		[{"idx": 0, "count": 2, "name": "Lateral posterior nucleus of the thalamus", "triplets": [173.16480676444618, 232.54422382671487, 201.6785197661734, 289.2872216125601, 232.54422382671487, 200.14874063235155], "r": 255, "g": 144, "b": 159}, {"idx": 1, "count": 2, "name": "Ventral posterolateral nucleus of the thalamus", "triplets": [151.80258120463463, 232.54422382671487, 139.26497372118678, 302.36268953893995, 232.54422382671487, 138.1392947451368], "r": 255, "g": 128, "b": 132}, {"idx": 2, "count": 2, "name": "Posterior complex of the thalamus", "triplets": [166.3575983200482, 232.54422382671487, 170.18405336467325, 293.4247604421047, 232.54422382671487, 170.71905167020356], "r": 255, "g": 144, "b": 159}]
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		[{"idx": 0, "count": 3, "name": "Field CA1", "triplets": [379.6554846650004, 189.45848375451277, 178.6886567538774, 378.25719613455095, 189.45848375451277, 146.9326584442673, 366.9803100259986, 189.45848375451277, 116.90047782696456], "r": 126, "g": 208, "b": 75}, {"idx": 1, "count": 3, "name": "Field CA3", "triplets": [107.79590535488221, 189.45848375451277, 174.98837715036564, 113.49628302707791, 189.45848375451277, 146.05184414020994, 121.16670595345234, 189.45848375451277, 121.66252407251372], "r": 126, "g": 208, "b": 75}]