From 2b632f59394d295e0cfeae97b2e0158d41156b64 Mon Sep 17 00:00:00 2001 From: "Ankur Sinha (Ankur Sinha Gmail)" Date: Tue, 18 Jun 2024 17:52:36 +0100 Subject: [PATCH] chore: regen neuroml schema docs --- scripts/schemas/generate-jupyter-ast.py | 1 + scripts/schemas/requirements.txt | 2 + source/Userdocs/Schemas/Cells.md | 577 ++++++++---------- source/Userdocs/Schemas/Channels.md | 38 +- source/Userdocs/Schemas/Inputs.md | 60 +- source/Userdocs/Schemas/Networks.md | 126 ++-- .../Userdocs/Schemas/NeuroMLCoreCompTypes.md | 21 +- .../Userdocs/Schemas/NeuroMLCoreDimensions.md | 2 +- source/Userdocs/Schemas/PyNN.md | 2 +- source/Userdocs/Schemas/Simulation.md | 2 +- source/Userdocs/Schemas/Synapses.md | 34 +- 11 files changed, 414 insertions(+), 451 deletions(-) diff --git a/scripts/schemas/generate-jupyter-ast.py b/scripts/schemas/generate-jupyter-ast.py index 067244db..b9d31907 100644 --- a/scripts/schemas/generate-jupyter-ast.py +++ b/scripts/schemas/generate-jupyter-ast.py @@ -180,6 +180,7 @@ def get_comp_examples(srcdirs, examples_max=3): examples.sort(key=len, reverse=True) # Let's only keep the first 5 examples for example in examples: + ET.indent(example, space=" ") if len(comp_type_examples[comp_type]) < examples_max: comp_type_examples[comp_type].append( ET.tostring(example, pretty_print=True, diff --git a/scripts/schemas/requirements.txt b/scripts/schemas/requirements.txt index 0566ce26..30e91588 100644 --- a/scripts/schemas/requirements.txt +++ b/scripts/schemas/requirements.txt @@ -1,2 +1,4 @@ libneuroml pylems +jinja2 +lxml diff --git a/source/Userdocs/Schemas/Cells.md b/source/Userdocs/Schemas/Cells.md index 5337db96..3133b819 100644 --- a/source/Userdocs/Schemas/Cells.md +++ b/source/Userdocs/Schemas/Cells.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [Cells.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Cells.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- @@ -245,7 +245,7 @@ extends *{ref}`schema:basechannelpopulation`* :width: 100% :delim: $ -**vShift** = 0mV$ $ {ref}`schema:dimensions:voltage` +**vShift** = 0mV$ Set to a constant 0mV here to allow ion channels which use _vShift in their rate variable expressions to be used with _channelPopulation_, not just with _channelDensityVShift_ (where _vShift would be explicitly set) $ {ref}`schema:dimensions:voltage` ``` ```` @@ -387,10 +387,10 @@ extends *{ref}`schema:basechannelpopulation`* :width: 100% :delim: $ -**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` -**zCa** = 2$ $ Dimensionless -**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` -**vShift** = 0mV$ $ {ref}`schema:dimensions:voltage` +**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` +**zCa** = 2$ $ Dimensionless +**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` +**vShift** = 0mV$ Set to a constant 0mV here to allow ion channels which use _vShift in their rate variable expressions to be used with _channelPopulation_, not just with _channelDensityVShift_ (where _vShift would be explicitly set) $ {ref}`schema:dimensions:voltage` ``` ```` @@ -614,8 +614,8 @@ variable = VariableParameter( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```` ````` @@ -816,10 +816,10 @@ variable = ChannelDensityNonUniform( ````{tab-item} Usage: XML ```{code-block} xml - - - - + + + + ``` ```` ````` @@ -1113,7 +1113,7 @@ extends *{ref}`schema:basechanneldensitycond`* :width: 100% :delim: $ -**vShift** = 0mV$ $ {ref}`schema:dimensions:voltage` +**vShift** = 0mV$ Set to a constant 0mV here to allow ion channels which use _vShift in their rate variable expressions to be used with _channelDensity_, not just with _channelDensityVShift_ (where _vShift would be explicitly set) $ {ref}`schema:dimensions:voltage` ``` ```` @@ -1359,9 +1359,9 @@ extends *{ref}`schema:basechanneldensitycond`* :width: 100% :delim: $ -**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` -**zCa** = 2$ $ Dimensionless -**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` +**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` +**zCa** = 2$ $ Dimensionless +**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` ``` ```` @@ -1515,9 +1515,9 @@ extends *{ref}`schema:basechanneldensitycond`* :width: 100% :delim: $ -**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` -**zCa** = 2$ $ Dimensionless -**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` +**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` +**zCa** = 2$ $ Dimensionless +**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` ``` ```` @@ -1659,9 +1659,9 @@ extends *{ref}`schema:basechanneldensity`* :width: 100% :delim: $ -**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` -**zCa** = 2$ $ Dimensionless -**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` +**R** = 8.3144621 J_per_K_per_mol$ $ {ref}`schema:dimensions:idealGasConstantDims` +**zCa** = 2$ $ Dimensionless +**F** = 96485.3 C_per_mol$ $ {ref}`schema:dimensions:charge_per_mole` ``` ```` @@ -2059,7 +2059,7 @@ extends *{ref}`schema:basecellmembpotcap`* -TEMPORARY: Point cell with conductances and Ca concentration info. Not yet fully tested!!! TODO: Remove in favour of {ref}`schema:cell`. +TEMPORARY: Point cell with conductances and Ca concentration info. Not yet fully tested!!! `````{tab-set} @@ -2500,24 +2500,22 @@ variable = Segment( ````{tab-item} Usage: XML ```{code-block} xml - - - - + + + + ``` ```{code-block} xml - - - - + + + ``` ```{code-block} xml - - - - + + + ``` ```` ````` @@ -2615,21 +2613,21 @@ variable = SegmentGroup( ```` ````{tab-item} Usage: XML ```{code-block} xml - - - - - + + + + + ``` ```{code-block} xml - - - + + + ``` ```{code-block} xml - - - + + + ``` ```` ````` @@ -2769,7 +2767,7 @@ variable = Member( :width: 100% :delim: $ -**href**$ TODO: fix this!!! This is needed here, since include is used to include external nml files!! +**href**$ **segmentGroup**$ ```` @@ -2863,9 +2861,9 @@ variable = Path( ````{tab-item} Usage: XML ```{code-block} xml - - - + + + ``` ```` ````` @@ -2922,8 +2920,8 @@ variable = SubTree( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```` ````` @@ -2997,9 +2995,9 @@ variable = InhomogeneousParameter( ````{tab-item} Usage: XML ```{code-block} xml - - - + + + ``` ```{code-block} xml @@ -3157,85 +3155,72 @@ variable = Morphology( ````{tab-item} Usage: XML ```{code-block} xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ``` ```{code-block} xml - - - - - - - - + + + + + + ``` ```{code-block} xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + ``` ```` ````` @@ -3580,9 +3565,9 @@ variable = MembraneProperties( channel_density_non_uniforms: 'list of ChannelDensityNonUniform(s) (optional)' = None, channel_density_non_uniform_nernsts: 'list of ChannelDensityNonUniformNernst(s) (optional)' = None, channel_density_non_uniform_ghks: 'list of ChannelDensityNonUniformGHK(s) (optional)' = None, - spike_threshes: 'list of SpikeThresh(s) (optional)' = None, - specific_capacitances: 'list of SpecificCapacitance(s) (optional)' = None, - init_memb_potentials: 'list of InitMembPotential(s) (optional)' = None, + spike_threshes: 'list of SpikeThresh(s) (required)' = None, + specific_capacitances: 'list of SpecificCapacitance(s) (required)' = None, + init_memb_potentials: 'list of InitMembPotential(s) (required)' = None, extensiontype_=None, ) ``` @@ -3590,33 +3575,30 @@ variable = MembraneProperties( ````{tab-item} Usage: XML ```{code-block} xml - - - - - - + + + + + + ``` ```{code-block} xml - - - - - - - + ``` ```{code-block} xml - - - - - - - + + + + + + + ``` ```` ````` @@ -3745,9 +3727,9 @@ variable = MembraneProperties2CaPools( channel_density_non_uniforms: 'list of ChannelDensityNonUniform(s) (optional)' = None, channel_density_non_uniform_nernsts: 'list of ChannelDensityNonUniformNernst(s) (optional)' = None, channel_density_non_uniform_ghks: 'list of ChannelDensityNonUniformGHK(s) (optional)' = None, - spike_threshes: 'list of SpikeThresh(s) (optional)' = None, - specific_capacitances: 'list of SpecificCapacitance(s) (optional)' = None, - init_memb_potentials: 'list of InitMembPotential(s) (optional)' = None, + spike_threshes: 'list of SpikeThresh(s) (required)' = None, + specific_capacitances: 'list of SpecificCapacitance(s) (required)' = None, + init_memb_potentials: 'list of InitMembPotential(s) (required)' = None, channel_density_nernst_ca2s: 'list of ChannelDensityNernstCa2(s) (optional)' = None, ) ``` @@ -3844,50 +3826,47 @@ variable = BiophysicalProperties( ````{tab-item} Usage: XML ```{code-block} xml - - - - - - - - - - - + + + + + + + + + + + ``` ```{code-block} xml - - - - - - - - - - - - + + ``` ```{code-block} xml - - - - - - - - - - - - + + + + + + + + + + + + ``` ```` ````` @@ -4067,20 +4046,20 @@ variable = IntracellularProperties( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```{code-block} xml - - - - + ``` ```{code-block} xml - - + + ``` ```` ````` @@ -5034,122 +5013,108 @@ variable = Cell( ````{tab-item} Usage: XML ```{code-block} xml - A Simple Spiking cell for testing purposes - - - - + A Simple Spiking cell for testing purposes + + + - - - - + + + - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ``` ```{code-block} xml ``` ```{code-block} xml - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + ``` ```` ````` diff --git a/source/Userdocs/Schemas/Channels.md b/source/Userdocs/Schemas/Channels.md index 7377ae8a..7e478aef 100644 --- a/source/Userdocs/Schemas/Channels.md +++ b/source/Userdocs/Schemas/Channels.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [Channels.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Channels.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- @@ -1406,21 +1406,21 @@ extends {ref}`schema:gate` ````{tab-item} Usage: XML ```{code-block} xml - - - + + + ``` ```{code-block} xml - - - + + + ``` ```{code-block} xml - - - + + + ``` ```` ````` @@ -2552,15 +2552,15 @@ variable = IonChannelHH( ``` ```{code-block} xml - - - - - - - - - + + + + + + + + + ``` ```` ````` diff --git a/source/Userdocs/Schemas/Inputs.md b/source/Userdocs/Schemas/Inputs.md index 1ba3b48a..43aa6c6c 100644 --- a/source/Userdocs/Schemas/Inputs.md +++ b/source/Userdocs/Schemas/Inputs.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [Inputs.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Inputs.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- @@ -256,7 +256,7 @@ extends *{ref}`schema:basespikesource`* :width: 100% :delim: $ -**SMALL_TIME** = 1e-9ms$ $ {ref}`schema:dimensions:time` +**SMALL_TIME** = 1e-9ms$ A useful constant for use as a non zero time increment $ {ref}`schema:dimensions:time` ``` ```` @@ -395,7 +395,7 @@ extends *{ref}`schema:basespikesource`* :width: 100% :delim: $ -**MSEC** = 1ms$ $ {ref}`schema:dimensions:time` +**MSEC** = 1ms$ Required for converting time values to/from dimensionless quantities $ {ref}`schema:dimensions:time` ``` ```` @@ -1441,23 +1441,23 @@ variable = TimedSynapticInput( ````{tab-item} Usage: XML ```{code-block} xml - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + ``` ```` ````` @@ -1582,12 +1582,12 @@ variable = SpikeArray( ````{tab-item} Usage: XML ```{code-block} xml - - - - - - + + + + + + ``` ```` ````` @@ -2003,10 +2003,10 @@ variable = CompoundInput( ````{tab-item} Usage: XML ```{code-block} xml - - - - + + + + ``` ```` ````` diff --git a/source/Userdocs/Schemas/Networks.md b/source/Userdocs/Schemas/Networks.md index 5cf8f04d..77036533 100644 --- a/source/Userdocs/Schemas/Networks.md +++ b/source/Userdocs/Schemas/Networks.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [Networks.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Networks.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- @@ -106,50 +106,48 @@ variable = Network( ````{tab-item} Usage: XML ```{code-block} xml - - - - - - - - - - - - - + + + + + + + + + + + + + ``` ```{code-block} xml - - - - - - - - - - - - - - - - - + + + + + + + + + + + + + + + + + ``` ```{code-block} xml - - - - + + - + - + ``` ```` ````` @@ -407,18 +405,18 @@ variable = Instance( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```` ````` @@ -652,16 +650,14 @@ variable = Projection( ``` ```{code-block} xml - - - - + + ``` ```{code-block} xml - - + + ``` ```` ````` @@ -1292,13 +1288,13 @@ variable = ElectricalProjection( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```` ````` @@ -1610,18 +1606,18 @@ variable = ContinuousProjection( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```` ````` @@ -1788,18 +1784,18 @@ variable = InputList( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```{code-block} xml - - + + ``` ```` ````` diff --git a/source/Userdocs/Schemas/NeuroMLCoreCompTypes.md b/source/Userdocs/Schemas/NeuroMLCoreCompTypes.md index 3343028b..917e69e8 100644 --- a/source/Userdocs/Schemas/NeuroMLCoreCompTypes.md +++ b/source/Userdocs/Schemas/NeuroMLCoreCompTypes.md @@ -7,7 +7,7 @@ Original ComponentType definitions: [NeuroMLCoreCompTypes.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//NeuroMLCoreCompTypes.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- @@ -112,17 +112,16 @@ variable = Annotation( ````{tab-item} Usage: XML ```{code-block} xml - - - - - + + + + - - - - - + + + + + ``` ```` ````` diff --git a/source/Userdocs/Schemas/NeuroMLCoreDimensions.md b/source/Userdocs/Schemas/NeuroMLCoreDimensions.md index 98e5c81d..3a14b590 100644 --- a/source/Userdocs/Schemas/NeuroMLCoreDimensions.md +++ b/source/Userdocs/Schemas/NeuroMLCoreDimensions.md @@ -7,7 +7,7 @@ Original ComponentType definitions: [NeuroMLCoreDimensions.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//NeuroMLCoreDimensions.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- diff --git a/source/Userdocs/Schemas/PyNN.md b/source/Userdocs/Schemas/PyNN.md index 43e45c94..987c5add 100644 --- a/source/Userdocs/Schemas/PyNN.md +++ b/source/Userdocs/Schemas/PyNN.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [PyNN.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//PyNN.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- diff --git a/source/Userdocs/Schemas/Simulation.md b/source/Userdocs/Schemas/Simulation.md index af78acc2..b5d6f818 100644 --- a/source/Userdocs/Schemas/Simulation.md +++ b/source/Userdocs/Schemas/Simulation.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [Simulation.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Simulation.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- diff --git a/source/Userdocs/Schemas/Synapses.md b/source/Userdocs/Schemas/Synapses.md index e66866ed..ffabb294 100644 --- a/source/Userdocs/Schemas/Synapses.md +++ b/source/Userdocs/Schemas/Synapses.md @@ -9,7 +9,7 @@ Original ComponentType definitions: [Synapses.xml](https://github.com/NeuroML/NeuroML2/blob/master/NeuroML2CoreTypes//Synapses.xml). Schema against which NeuroML based on these should be valid: [NeuroML_v2.3.xsd](https://github.com/NeuroML/NeuroML2/tree/master/Schemas/NeuroML2/NeuroML_v2.3.xsd). -Generated on 05/12/23 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. +Generated on 18/06/24 from [this](https://github.com/NeuroML/NeuroML2/commit/352244cff605cb1ba24fa7c11757dc818fe90fd2) commit. Please file any issues or questions at the [issue tracker here](https://github.com/NeuroML/NeuroML2/issues). --- @@ -917,8 +917,8 @@ variable = AlphaSynapse( ````{tab-item} Usage: XML ```{code-block} xml - An alpha synapse with time for rise equal to decay. - + An alpha synapse with time for rise equal to decay. + ``` ```` ````` @@ -1316,8 +1316,8 @@ variable = ExpThreeSynapse( ``` ```{code-block} xml - A synapse consisting of one rise and two decay time courses. - + A synapse consisting of one rise and two decay time courses. + ``` ```` ````` @@ -1860,23 +1860,23 @@ variable = BlockingPlasticSynapse( ````{tab-item} Usage: XML ```{code-block} xml - - + + ``` ```{code-block} xml - A biexponential blocking synapse, with STD. - - - + A biexponential blocking synapse, with STD. + + + ``` ```{code-block} xml - A biexponential blocking synapse with short term + A biexponential blocking synapse with short term depression and facilitation. - - - + + + ``` ```` ````` @@ -2053,8 +2053,8 @@ variable = DoubleSynapse( ````{tab-item} Usage: XML ```{code-block} xml - A single "synapse" which contains both AMPA and NMDA. It is planned that the need for extra synapse1Path/synapse2Path attributes can be removed in later versions. - + A single "synapse" which contains both AMPA and NMDA. It is planned that the need for extra synapse1Path/synapse2Path attributes can be removed in later versions. + ``` ```` `````