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Figure3_HHcell.xml
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Figure3_HHcell.xml
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<Lems>
<Target component="sim1"/>
<!-- Include standard NeuroML2 ComponentType definitions -->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>
<!-- Main NeuroML2 content -->
<Include file="Figure3_HHcell.nml"/>
<!-- End of NeuroML2 content -->
<Simulation id="sim1" length="200ms" step="0.01ms" target="net1">
<Display id="d1" title="Voltage" timeScale="1ms" xmin="0" xmax="200" ymin="-90" ymax="60">
<Line id="v" quantity="hhpop[0]/v" scale="1mV" color="#ffffff" timeScale="1ms"/>
</Display>
<Display id="d2" title="Rate variables" timeScale="1ms" xmin="0" xmax="200" ymin="-0.1" ymax="1.1">
<Line id="m" quantity="hhpop[0]/naChans/na/m/q" scale="1" color="#000000" timeScale="1ms"/>
<Line id="h" quantity="hhpop[0]/naChans/na/h/q" scale="1" color="#ff0000" timeScale="1ms"/>
<Line id="n" quantity="hhpop[0]/kChans/k/n/q" scale="1" color="#0000ff" timeScale="1ms"/>
</Display>
<OutputFile id="of0" fileName="hh_v.dat">
<OutputColumn id="v" quantity="hhpop[0]/v"/>
</OutputFile>
<OutputFile id="of1" fileName="mhn_v.dat">
<OutputColumn id="m" quantity="hhpop[0]/naChans/na/m/q"/>
<OutputColumn id="h" quantity="hhpop[0]/naChans/na/h/q"/>
<OutputColumn id="n" quantity="hhpop[0]/kChans/k/n/q"/>
</OutputFile>
</Simulation>
</Lems>