From 3c12285ff0c5e8db9e93406890bcddbffa687f3d Mon Sep 17 00:00:00 2001 From: pgleeson Date: Tue, 20 Aug 2024 12:57:51 +0100 Subject: [PATCH 1/2] To v0.13.4; allows xml or sbml files to be validated as SBML --- pyneuroml/__init__.py | 2 +- pyneuroml/pynml.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pyneuroml/__init__.py b/pyneuroml/__init__.py index ce1ec3e0..c382211b 100644 --- a/pyneuroml/__init__.py +++ b/pyneuroml/__init__.py @@ -12,7 +12,7 @@ __version__ = importlib_metadata.version("pyNeuroML") -JNEUROML_VERSION = "0.13.3" +JNEUROML_VERSION = "0.13.4" # Define a logger for the package logging.basicConfig( diff --git a/pyneuroml/pynml.py b/pyneuroml/pynml.py index d6f6816d..6f660b0a 100644 --- a/pyneuroml/pynml.py +++ b/pyneuroml/pynml.py @@ -567,7 +567,7 @@ def _evaluate_arguments(args): # Deal with the SBML validation option which doesn't call run_jneuroml if args.validate_sbml or args.validate_sbml_units: - file_types = ["sbml"] + file_types = ["sbml","xml"] try: from pyneuroml.sbml import validate_sbml_files except Exception: From f01b7623279fa57c0d8fada68d034fe0c9f798a1 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Tue, 20 Aug 2024 13:00:18 +0100 Subject: [PATCH 2/2] To v1.3.8; Correctly iterate the version of pynml, not jnml --- pyneuroml/__init__.py | 2 +- setup.cfg | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pyneuroml/__init__.py b/pyneuroml/__init__.py index c382211b..ce1ec3e0 100644 --- a/pyneuroml/__init__.py +++ b/pyneuroml/__init__.py @@ -12,7 +12,7 @@ __version__ = importlib_metadata.version("pyNeuroML") -JNEUROML_VERSION = "0.13.4" +JNEUROML_VERSION = "0.13.3" # Define a logger for the package logging.basicConfig( diff --git a/setup.cfg b/setup.cfg index ee29d3b8..c5dc1441 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,6 +1,6 @@ [metadata] name = pyNeuroML -version = 1.3.7 +version = 1.3.8 author = Padraig Gleeson author_email = p.gleeson@gmail.com url = https://github.com/NeuroML/pyNeuroML