Preprocessing pipeline for Neuropixel recordings
Install Miniforge (https://github.com/conda-forge/miniforge#mambaforge)
Open the Miniforge terminal and do:
mamba create -n spikeinterface python=3.10
mamba activate spikeinterface
pip install spikeinterface[full,widgets]
pip install git
git clone https://github.com/NeuroNetMem/pipeline_Neuropixel
pip install docker
pip install ibllib
pip install spikeinterface-gui
Instructions to set up Docker (for Windows):
Install Docker Desktop (https://www.docker.com/products/docker-desktop/)
Create an account on Docker Hub (https://hub.docker.com/)
Install WSL2; open a PowerShell terminal and type
wsl --install