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DESCRIPTION
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DESCRIPTION
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Package: SCPA
Title: Single Cell Pathway Analysis
Version: 1.0.0
Authors@R:
c(person("Jack", "Bibby", , "[email protected]", role = c("aut", "cre")),
person("Divyansh", "Agarwal", role = c("aut")))
Description: SCPA performs pathway analysis on single cell data.
It relies on understanding changes in multivariate distributions
of pathways between samples as a basis for judging biological
relevance. Two basic arguments are necessary: matrices of data
and pathways that you want to analyze. See the GitHub page:
https://github.com/jackbibby1/SCPA for a detailed description and tutorials.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
URL: jackbibby1.github.io/SCPA, https://github.com/jackbibby1/SCPA/
BugReports: https://github.com/jackbibby1/SCPA/issues/
Imports:
circlize (>= 0.4.15),
ComplexHeatmap (>= 2.13.1),
dplyr (>= 1.0.9),
ggplot2 (>= 3.3.6),
ggrepel (>= 0.9.1),
magrittr (>= 2.0.3),
msigdbr (>= 7.5.1),
multicross (>= 2.1.0),
purrr (>= 0.3.4),
Seurat (>= 4.1.1),
stats (>= 4.1.0),
stringr (>= 1.4.0),
tibble (>= 3.1.7),
tidyr (>= 1.2.0),
utils (>= 4.1.0)
Suggests:
rmarkdown,
knitr
VignetteBuilder: knitr
Depends:
R (>= 2.10)