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Merge branch 'main' into 9363-add-db-constraint-so-only-one-external-…
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…id-org-disambiguated
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amontenegro authored Aug 28, 2024
2 parents faf82a3 + a290129 commit 5b6a6ad
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Showing 125 changed files with 174 additions and 377 deletions.
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import org.orcid.core.exception.OrcidBadRequestException;
import org.orcid.core.locale.LocaleManager;
import org.orcid.core.manager.impl.OrcidUrlManager;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.utils.OrcidStringUtils;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.web.bind.annotation.RequestMethod;

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import org.orcid.core.manager.impl.OrcidUrlManager;
import org.orcid.core.togglz.Features;
import org.orcid.core.utils.JsonUtils;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.jaxb.model.v3.release.error.OrcidError;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.web.filter.OncePerRequestFilter;
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import org.orcid.core.exception.OrcidUnauthorizedException;
import org.orcid.core.oauth.OrcidOauth2TokenDetailService;
import org.orcid.persistence.jpa.entities.ProfileEntity;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.springframework.security.core.Authentication;
import org.springframework.security.core.context.SecurityContext;
import org.springframework.security.core.context.SecurityContextHolder;
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import org.orcid.core.manager.impl.OrcidUrlManager;
import org.orcid.core.oauth.OAuthError;
import org.orcid.core.oauth.OAuthErrorUtils;
import org.orcid.core.utils.DateUtils;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.DateUtils;
import org.orcid.utils.OrcidStringUtils;
import org.orcid.core.version.ApiSection;
import org.orcid.jaxb.model.message.DeprecatedDate;
import org.orcid.jaxb.model.message.ErrorDesc;
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import javax.servlet.http.HttpServletResponse;

import org.orcid.core.locale.LocaleManager;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.springframework.security.authentication.AuthenticationProvider;
import org.springframework.security.authentication.UsernamePasswordAuthenticationToken;
import org.springframework.security.core.Authentication;
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import org.orcid.jaxb.model.notification.permission_v2.NotificationPermission;
import org.orcid.jaxb.model.notification_v2.Notification;
import org.orcid.persistence.jpa.entities.ProfileEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.security.core.Authentication;
import org.springframework.security.core.context.SecurityContextHolder;
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import org.orcid.test.DBUnitTest;
import org.orcid.test.OrcidJUnit4ClassRunner;
import org.orcid.test.helper.Utils;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.test.context.ContextConfiguration;

@RunWith(OrcidJUnit4ClassRunner.class)
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import org.orcid.test.DBUnitTest;
import org.orcid.test.OrcidJUnit4ClassRunner;
import org.orcid.test.helper.Utils;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.test.context.ContextConfiguration;
import org.springframework.test.util.ReflectionTestUtils;

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import org.orcid.test.OrcidJUnit4ClassRunner;
import org.orcid.test.TargetProxyHelper;
import org.orcid.test.helper.Utils;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.mock.web.MockHttpServletRequest;
import org.springframework.test.context.ContextConfiguration;
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import org.junit.runner.RunWith;
import org.orcid.api.common.util.v3.ActivityUtils;
import org.orcid.core.exception.OrcidUnauthorizedException;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.orcid.core.utils.SecurityContextTestUtils;
import org.orcid.jaxb.model.groupid_v2.GroupIdRecord;
import org.orcid.jaxb.model.message.ScopePathType;
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import org.orcid.test.DBUnitTest;
import org.orcid.test.OrcidJUnit4ClassRunner;
import org.orcid.test.helper.v3.Utils;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.test.context.ContextConfiguration;
import org.springframework.test.util.ReflectionTestUtils;

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import org.orcid.test.OrcidJUnit4ClassRunner;
import org.orcid.test.TargetProxyHelper;
import org.orcid.test.helper.v3.Utils;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.mock.web.MockHttpServletRequest;
import org.springframework.test.context.ContextConfiguration;
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7 changes: 1 addition & 6 deletions orcid-core/pom.xml
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<version>2.0.1</version>
</dependency>

<!-- https://mvnrepository.com/artifact/org.jsoup/jsoup -->
<dependency>
<groupId>org.jsoup</groupId>
<artifactId>jsoup</artifactId>
<version>1.15.4</version>
</dependency>

<!-- https://mvnrepository.com/artifact/javax.ws.rs/javax.ws.rs-api -->
<dependency>
<groupId>javax.ws.rs</groupId>
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import org.orcid.persistence.jpa.entities.StartDateEntity;
import org.orcid.persistence.jpa.entities.WorkEntity;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.springframework.beans.factory.FactoryBean;

import ma.glasnost.orika.CustomMapper;
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import org.orcid.persistence.dao.ProfileLastModifiedDao;
import org.orcid.persistence.jpa.entities.IndexingStatus;
import org.orcid.persistence.jpa.entities.OrcidAware;
import org.orcid.persistence.util.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Value;
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import org.orcid.core.manager.EncryptionManager;
import org.orcid.persistence.jpa.entities.ClientDetailsEntity;
import org.orcid.persistence.jpa.entities.ClientSecretEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.core.utils.NullUtils;
import org.orcid.utils.DateUtils;
import org.orcid.utils.NullUtils;
import org.springframework.context.ApplicationContext;
import org.springframework.context.support.ClassPathXmlApplicationContext;
import org.springframework.transaction.TransactionStatus;
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import org.kohsuke.args4j.Option;
import org.orcid.persistence.dao.GenericDao;
import org.orcid.persistence.jpa.entities.WorkEntity;
import org.orcid.core.utils.NullUtils;
import org.orcid.utils.NullUtils;
import org.springframework.context.ApplicationContext;
import org.springframework.context.support.ClassPathXmlApplicationContext;

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import org.orcid.jaxb.model.v3.release.record.summary.WorkGroup;
import org.orcid.jaxb.model.v3.release.record.summary.WorkSummary;
import org.orcid.jaxb.model.v3.release.record.summary.Works;
import org.orcid.core.utils.NullUtils;
import org.orcid.utils.NullUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.context.ApplicationContext;
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import org.kohsuke.args4j.Option;
import org.orcid.persistence.dao.ProfileDao;
import org.orcid.persistence.jpa.entities.IndexingStatus;
import org.orcid.core.utils.NullUtils;
import org.orcid.utils.NullUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.context.ApplicationContext;
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import org.orcid.jaxb.model.v3.release.record.WorkContributors;
import org.orcid.pojo.ajaxForm.ActivityExternalIdentifier;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.utils.OrcidStringUtils;
import org.orcid.core.contributors.roles.works.WorkContributorRoleConverter;
import org.orcid.core.utils.OrcidStringUtils;

public class AnonymizeText {

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import org.orcid.jaxb.model.v3.release.record.ExternalIDs;
import org.orcid.jaxb.model.v3.release.record.Work;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;

import com.fasterxml.jackson.annotation.JsonProperty;

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import org.orcid.core.manager.CountryManager;
import org.orcid.jaxb.model.message.OrcidProfile;
import org.orcid.persistence.jpa.entities.CountryIsoEntity;
import org.orcid.utils.OrcidStringUtils;
import org.orcid.core.utils.FunctionsOverCollections;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.core.utils.UTF8Control;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.cache.annotation.Cacheable;
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import org.orcid.core.crypto.DesEncrypter;
import org.orcid.core.manager.EncryptionManager;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.InitializingBean;
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import org.orcid.jaxb.model.groupid_v2.GroupIdRecord;
import org.orcid.persistence.jpa.entities.GroupIdRecordEntity;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Value;
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import org.orcid.persistence.jpa.entities.ProfileEntity;
import org.orcid.persistence.jpa.entities.SourceAwareEntity;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.security.core.Authentication;
import org.springframework.security.core.GrantedAuthority;
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import org.orcid.core.manager.OrgManager;
import org.orcid.core.manager.SourceManager;
import org.orcid.core.manager.read_only.ClientDetailsManagerReadOnly;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.jaxb.model.common_v2.OrganizationHolder;
import org.orcid.jaxb.model.message.Iso3166Country;
import org.orcid.jaxb.model.message.Organization;
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import org.orcid.persistence.jpa.entities.OrgEntity;
import org.orcid.persistence.jpa.entities.ProfileEntity;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.utils.OrcidStringUtils;

import au.com.bytecode.opencsv.CSVWriter;

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import org.orcid.jaxb.model.record_v2.Biography;
import org.orcid.persistence.dao.BiographyDao;
import org.orcid.persistence.jpa.entities.BiographyEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

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import org.orcid.jaxb.model.record_v2.OtherName;
import org.orcid.jaxb.model.record_v2.OtherNames;
import org.orcid.jaxb.model.record_v2.PersonalDetails;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;

/**
*
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import org.orcid.jaxb.model.record_v2.SubmissionDate;
import org.orcid.persistence.jpa.entities.ProfileEntity;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

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import org.orcid.jaxb.model.v3.release.groupid.GroupIdRecord;
import org.orcid.persistence.jpa.entities.GroupIdRecordEntity;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Value;
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import org.orcid.core.manager.v3.SourceManager;
import org.orcid.core.manager.v3.read_only.ClientManagerReadOnly;
import org.orcid.core.security.OrcidWebRole;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.jaxb.model.clientgroup.ClientType;
import org.orcid.jaxb.model.clientgroup.MemberType;
import org.orcid.jaxb.model.message.CreationMethod;
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import org.orcid.pojo.ajaxForm.Member;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.pojo.ajaxForm.Text;
import org.orcid.utils.OrcidStringUtils;
import org.springframework.transaction.TransactionStatus;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.transaction.support.TransactionCallbackWithoutResult;
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import org.orcid.persistence.jpa.entities.ProfileEntity;
import org.orcid.persistence.jpa.entities.SourceAwareEntity;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.beans.factory.annotation.Value;
import org.springframework.security.core.Authentication;
import org.springframework.security.core.GrantedAuthority;
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import org.orcid.jaxb.model.v3.release.record.Biography;
import org.orcid.persistence.dao.BiographyDao;
import org.orcid.persistence.jpa.entities.BiographyEntity;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

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import org.orcid.persistence.jpa.entities.EmailEntity;
import org.orcid.pojo.EmailFrequencyOptions;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

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import org.orcid.persistence.jpa.entities.GivenPermissionToEntity;
import org.orcid.pojo.DelegateForm;
import org.orcid.pojo.ajaxForm.Text;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.springframework.cache.annotation.Cacheable;

public class GivenPermissionToManagerReadOnlyImpl extends ManagerReadOnlyBaseImpl implements GivenPermissionToManagerReadOnly {
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import org.orcid.jaxb.model.v3.release.record.OtherName;
import org.orcid.jaxb.model.v3.release.record.OtherNames;
import org.orcid.jaxb.model.v3.release.record.PersonalDetails;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;

/**
*
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import org.orcid.core.manager.v3.read_only.EmailManagerReadOnly;
import org.orcid.core.manager.v3.read_only.PersonDetailsManagerReadOnly;
import org.orcid.core.manager.v3.read_only.RecordManagerReadOnly;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.orcid.core.utils.SourceEntityUtils;
import org.orcid.jaxb.model.common.AvailableLocales;
import org.orcid.jaxb.model.common.OrcidType;
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import org.orcid.jaxb.model.v3.release.record.WorkTitle;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

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import org.orcid.jaxb.model.record_v2.WorkType;
import org.orcid.persistence.jpa.entities.SourceEntity;
import org.orcid.pojo.ajaxForm.PojoUtil;
import org.orcid.core.utils.OrcidStringUtils;
import org.orcid.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;

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import org.orcid.pojo.OrgDisambiguated;
import org.orcid.pojo.OrgDisambiguatedExternalIdentifiers;
import org.orcid.pojo.grouping.OrgGroup;
import org.orcid.utils.OrcidStringUtils;
import org.orcid.core.utils.FunderIdentifierType;
import org.orcid.core.utils.OrcidStringUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.stereotype.Component;
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import org.orcid.core.manager.ProfileEntityManager;
import org.orcid.core.oauth.OrcidOAuth2Authentication;
import org.orcid.core.oauth.OrcidOauth2TokenDetailService;
import org.orcid.core.utils.DateUtils;
import org.orcid.utils.DateUtils;
import org.orcid.jaxb.model.message.OrcidIdentifier;
import org.orcid.jaxb.model.message.OrcidMessage;
import org.orcid.jaxb.model.message.ScopePathType;
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