diff --git a/README.md b/README.md index 82be821..b60b7d8 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It | Format | EXT | Test | | ------ | ---------------------------------------- | ------- | -| DICOM | .dcm, .DICOM | ✅ pass | +| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass | | BMP | .bmp, .BMP | ✅ pass | | JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass | | PNG | .png, .PNG | ✅ pass | @@ -32,6 +32,8 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It | Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass | | Nrrd | .nrrd, .nhdr | ✅ pass | | HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass | +| OME | .ome.tiff, .ome.tif | ✅ pass | +| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass | ## Support 4D volumetric data diff --git a/docs/index.md b/docs/index.md index bb1c1b5..fd4bc0d 100644 --- a/docs/index.md +++ b/docs/index.md @@ -17,7 +17,7 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It | Format | EXT | Test | | ------ | ---------------------------------------- | ------- | -| DICOM | .dcm, .DICOM | ✅ pass | +| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass | | BMP | .bmp, .BMP | ✅ pass | | JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass | | PNG | .png, .PNG | ✅ pass | @@ -25,6 +25,8 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It | Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass | | Nrrd | .nrrd, .nhdr | ✅ pass | | HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass | +| OME | .ome.tiff, .ome.tif | ✅ pass | +| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass | ## Support 4D volumetric data diff --git a/docs/prepare_data.md b/docs/prepare_data.md index 76409e8..6883231 100644 --- a/docs/prepare_data.md +++ b/docs/prepare_data.md @@ -6,7 +6,7 @@ First thing first, you need to get your volumetric data ready in disk. Bioxel No | Format | EXT | Test | | ------ | ---------------------------------------- | ------- | -| DICOM | .dcm, .DICOM | ✅ pass | +| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass | | BMP | .bmp, .BMP | ✅ pass | | JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass | | PNG | .png, .PNG | ✅ pass | @@ -21,6 +21,8 @@ First thing first, you need to get your volumetric data ready in disk. Bioxel No | LSM | .lsm, .LSM | yet | | MINC | .mnc, .MNC | yet | | MRC | .mrc, .rec | yet | +| OME | .ome.tiff, .ome.tif | ✅ pass | +| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass | ## Download Data from Internet @@ -32,10 +34,12 @@ If you don't have any volumetric data, you can access open research data from li | ------------------------------------------------------------------------------------ | ------------------ | | [MorphoSource](https://www.morphosource.org/) | Open Research Data | | [Dryad](https://datadryad.org) | Open Research Data | +| [Cell Image Library](http://cellimagelibrary.org/home) | Cells | | [OpenOrganelle](https://openorganelle.janelia.org/datasets) | Cells | +| [Allen Cell Explorer](https://www.allencell.org/3d-cell-viewer.html) | Cells | +| [EMDB](https://www.ebi.ac.uk/emdb/) | Protein, Viruses | | [Embodi3D](https://www.embodi3d.com/files/category/37-medical-scans/) | Medical Images | | [Github](https://github.com/sfikas/medical-imaging-datasets) | Medical Images | | [NIHR](https://nhsx.github.io/open-source-imaging-data-sets/) | Medical Images | | [Medical Segmentation Decathlon](http://medicaldecathlon.com/) | Medical Images | -| [Allen Cell Explorer](https://www.allencell.org/3d-cell-viewer.html) | Cells | | [Visible Human Project](https://www.nlm.nih.gov/research/visible/visible_human.html) | Medical Images |