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docs: update README #30

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docs: update README #30

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4 changes: 3 additions & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -24,14 +24,16 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It

| Format | EXT | Test |
| ------ | ---------------------------------------- | ------- |
| DICOM | .dcm, .DICOM | ✅ pass |
| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass |
| BMP | .bmp, .BMP | ✅ pass |
| JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass |
| PNG | .png, .PNG | ✅ pass |
| TIFF | .tif, .TIF, .tiff, .TIFF | ✅ pass |
| Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass |
| Nrrd | .nrrd, .nhdr | ✅ pass |
| HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass |
| OME | .ome.tiff, .ome.tif | ✅ pass |
| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass |

## Support 4D volumetric data

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4 changes: 3 additions & 1 deletion docs/index.md
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Expand Up @@ -17,14 +17,16 @@ Bioxel Nodes is a Blender addon for scientific volumetric data visualization. It

| Format | EXT | Test |
| ------ | ---------------------------------------- | ------- |
| DICOM | .dcm, .DICOM | ✅ pass |
| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass |
| BMP | .bmp, .BMP | ✅ pass |
| JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass |
| PNG | .png, .PNG | ✅ pass |
| TIFF | .tif, .TIF, .tiff, .TIFF | ✅ pass |
| Nifti | .nia, .nii, .nii.gz, .hdr, .img, .img.gz | ✅ pass |
| Nrrd | .nrrd, .nhdr | ✅ pass |
| HDF5 | .hdf, .h4, .hdf4, .he2, .h5, .hdf5, .he5 | ✅ pass |
| OME | .ome.tiff, .ome.tif | ✅ pass |
| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass |

## Support 4D volumetric data

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8 changes: 6 additions & 2 deletions docs/prepare_data.md
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Expand Up @@ -6,7 +6,7 @@ First thing first, you need to get your volumetric data ready in disk. Bioxel No

| Format | EXT | Test |
| ------ | ---------------------------------------- | ------- |
| DICOM | .dcm, .DICOM | ✅ pass |
| DICOM | .dcm, .DCM, .DICOM, .ima, .IMA | ✅ pass |
| BMP | .bmp, .BMP | ✅ pass |
| JPEG | .jpg, .JPG, .jpeg, .JPEG | ✅ pass |
| PNG | .png, .PNG | ✅ pass |
Expand All @@ -21,6 +21,8 @@ First thing first, you need to get your volumetric data ready in disk. Bioxel No
| LSM | .lsm, .LSM | yet |
| MINC | .mnc, .MNC | yet |
| MRC | .mrc, .rec | yet |
| OME | .ome.tiff, .ome.tif | ✅ pass |
| MRC | .mrc, .mrc.gz, .map, .map.gz | ✅ pass |

## Download Data from Internet

Expand All @@ -32,10 +34,12 @@ If you don't have any volumetric data, you can access open research data from li
| ------------------------------------------------------------------------------------ | ------------------ |
| [MorphoSource](https://www.morphosource.org/) | Open Research Data |
| [Dryad](https://datadryad.org) | Open Research Data |
| [Cell Image Library](http://cellimagelibrary.org/home) | Cells |
| [OpenOrganelle](https://openorganelle.janelia.org/datasets) | Cells |
| [Allen Cell Explorer](https://www.allencell.org/3d-cell-viewer.html) | Cells |
| [EMDB](https://www.ebi.ac.uk/emdb/) | Protein, Viruses |
| [Embodi3D](https://www.embodi3d.com/files/category/37-medical-scans/) | Medical Images |
| [Github](https://github.com/sfikas/medical-imaging-datasets) | Medical Images |
| [NIHR](https://nhsx.github.io/open-source-imaging-data-sets/) | Medical Images |
| [Medical Segmentation Decathlon](http://medicaldecathlon.com/) | Medical Images |
| [Allen Cell Explorer](https://www.allencell.org/3d-cell-viewer.html) | Cells |
| [Visible Human Project](https://www.nlm.nih.gov/research/visible/visible_human.html) | Medical Images |
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