Preferences Feature added #678
Workflow file for this run
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| name: CMake Build Matrix | |
| # Many thanks to Cristian Adam for examples | |
| # e.g. https://github.com/cristianadam/HelloWorld/blob/master/.github/workflows/build_cmake.yml | |
| # https://cristianadam.eu/20191222/using-github-actions-with-c-plus-plus-and-cmake/ | |
| on: [push, pull_request] | |
| env: | |
| BUILD_TYPE: Release | |
| QT_VERSION: 5.15.2 | |
| # this is different from MACOSX_DEPLOYMENT_TARGET to prevent build problems | |
| # we set MACOSX_DEPLOYMENT_TARGET later | |
| MACOS_TARGET: 10.12 | |
| FEATURES: -DUSE_VTK=ON -DBUILD_GPL_PLUGINS=ON -DWITH_COORDGEN=OFF | |
| jobs: | |
| build: | |
| name: ${{ matrix.config.name }} | |
| runs-on: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { | |
| name: "Ubuntu GCC", artifact: "Ubuntu-Latest.tar.gz", | |
| os: ubuntu-latest, | |
| cc: "gcc", cxx: "g++", | |
| build_type: "Release", | |
| cmake_flags: "-G Ninja -DENABLE_TESTING=ON -DTEST_QTGL=OFF -DCMAKE_BUILD_TYPE=Release", | |
| cpack: "", | |
| } | |
| - { | |
| name: "Ubuntu AppImage", artifact: "Avogadro2.AppImage", | |
| os: ubuntu-20.04, | |
| cc: "gcc", cxx: "g++", | |
| build_type: "Release", | |
| cmake_flags: "-G Ninja -DINSTALL_BUNDLE_FILES=ON -DCMAKE_BUILD_TYPE=Release", | |
| cpack: "", | |
| } | |
| - { | |
| name: "macOS Latest Clang", artifact: "macOS.dmg", | |
| os: macos-latest, | |
| cc: "clang", cxx: "clang++", | |
| build_type: "Release", | |
| cmake_flags: "-G Ninja", | |
| cpack_flags: "-G DragNDrop", | |
| } | |
| - { | |
| name: "Windows Latest MSVC", artifact: "Win64.exe", | |
| os: windows-latest, | |
| cc: "cl", cxx: "cl", | |
| build_type: "Release", | |
| cmake_flags: "", | |
| build_flags: "-j 2", | |
| cpack_flags: "-G NSIS", | |
| ssl_env: "D:\\a\\avogadroapp\\Qt\\Tools\\OpenSSLv3\\Win_x64", | |
| } | |
| - { | |
| name: "Ubuntu Address Sanitizer", artifact: "", | |
| os: ubuntu-20.04, | |
| cc: "gcc", cxx: "g++", | |
| build_type: "asan", | |
| cmake_flags: "-G Ninja -DENABLE_TESTING=ON -DTEST_QTGL=OFF", | |
| cpack: "", | |
| } | |
| - { | |
| name: "Ubuntu Leak Sanitizer", artifact: "", | |
| os: ubuntu-20.04, | |
| cc: "gcc", cxx: "g++", | |
| build_type: "lsan", | |
| cmake_flags: "-G Ninja -DENABLE_TESTING=ON -DTEST_QTGL=OFF", | |
| cpack: "", | |
| } | |
| - { | |
| name: "Ubuntu Thread Sanitizer", artifact: "", | |
| os: ubuntu-20.04, | |
| cc: "gcc", cxx: "g++", | |
| build_type: "tsan", | |
| cmake_flags: "-G Ninja -DENABLE_TESTING=ON -DTEST_QTGL=OFF", | |
| cpack: "", | |
| } | |
| - { | |
| name: "Ubuntu Undefined Behavior Sanitizer", artifact: "", | |
| os: ubuntu-20.04, | |
| cc: "gcc", cxx: "g++", | |
| build_type: "ubsan", | |
| cmake_flags: "-G Ninja -DENABLE_TESTING=ON -DTEST_QTGL=OFF", | |
| cpack: "", | |
| } | |
| steps: | |
| - name: Install Dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get -qq install ninja-build libeigen3-dev libboost-all-dev libglew-dev libxml2-dev | |
| sudo apt-get -qq install qtbase5-dev qtchooser qt5-qmake qtbase5-dev-tools libqt5x11extras5-dev libqt5svg5-dev | |
| - name: Install Dependencies (macOS) | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install ninja boost eigen glew open-babel | |
| - name: Install Dependencies (Windows) | |
| if: runner.os == 'Windows' | |
| run: choco install ninja | |
| - name: Checkout openchemistry | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: openchemistry/openchemistry | |
| submodules: recursive | |
| - name: Checkout avogadroapp | |
| uses: actions/checkout@v4 | |
| with: | |
| path: avogadroapp | |
| - name: Checkout avogadrolibs | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: openchemistry/avogadrolibs | |
| path: avogadrolibs | |
| - name: Cache Qt | |
| id: cache-qt | |
| uses: actions/cache@v4 | |
| with: | |
| path: ../Qt | |
| key: ${{ runner.os }}-QtCache | |
| - name: Install Qt | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| aqtversion: '==3.1.*' | |
| cache: true | |
| version: ${{ env.QT_VERSION }} | |
| - name: Install OpenSSL (Win64) | |
| if: runner.os == 'Windows' | |
| uses: jurplel/install-qt-action@v3 | |
| with: | |
| aqtversion: '==3.1.*' | |
| cache: true | |
| host: 'windows' | |
| target: 'desktop' | |
| tools-only: 'true' | |
| tools: 'tools_opensslv3_x64' | |
| - name: Configure MSVC Command Prompt | |
| if: runner.os == 'Windows' | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| with: | |
| arch: x64 | |
| - name: Configure | |
| run: | | |
| if [ ! -d "${{ runner.workspace }}/build" ]; then mkdir "${{ runner.workspace }}/build"; fi | |
| cd "${{ runner.workspace }}/build" | |
| # won't have any effect except on Mac | |
| echo "MACOSX_DEPLOYMENT_TARGET=${{ env.MACOS_TARGET }}" >> $GITHUB_ENV | |
| CC=${{matrix.config.cc}} CXX=${{matrix.config.cxx}} cmake $GITHUB_WORKSPACE ${{env.FEATURES}} -DCMAKE_BUILD_TYPE=${{matrix.config.build_type}} ${{matrix.config.cmake_flags}} | |
| shell: bash | |
| - name: Build | |
| run: | | |
| CC=${{matrix.config.cc}} CXX=${{matrix.config.cxx}} cmake --build . --config ${{matrix.config.build_type}} ${{matrix.config.build_flags}} | |
| shell: bash | |
| working-directory: ${{ runner.workspace }}/build | |
| - name: Setup tmate session | |
| if: failure() | |
| uses: mxschmitt/action-tmate@v3 | |
| - name: Fix Mac plugins | |
| if: runner.os == 'macOS' | |
| working-directory: ${{ runner.workspace }}/build/prefix/lib/openbabel | |
| run: | | |
| for plugin in *.so; do | |
| for libpath in `otool -L ${plugin} | grep '/Users/runner/work' | awk '{print $1}'`; do | |
| export lib=`echo $libpath | cut -d '/' -f 9`; | |
| echo "Fixing $plugin $lib $libpath" | |
| install_name_tool -change $libpath @executable_path/../Frameworks/$lib $plugin | |
| done | |
| done | |
| cd .. # build/prefix/lib | |
| for plugin in libinchi.?.?.?.dylib; do | |
| for libpath in `otool -L ${plugin} | grep '/Users/runner/work' | awk '{print $1}'`; do | |
| export lib=`echo $libpath | cut -d '/' -f 9`; | |
| echo "Fixing $plugin $lib $libpath" | |
| install_name_tool -change $libpath @executable_path/../Frameworks/$lib $plugin | |
| done | |
| done | |
| otool -L libinchi.?.?.?.dylib | |
| cp -p libinchi* ../Avogadro2.app/Contents/Frameworks/ | |
| - name: Run tests | |
| if: matrix.config.os == 'ubuntu-20.04' | |
| shell: cmake -P {0} | |
| run: | | |
| include(ProcessorCount) | |
| ProcessorCount(N) | |
| set(ENV{CTEST_OUTPUT_ON_FAILURE} "ON") | |
| set(ENV{ASAN_OPTIONS} "new_delete_type_mismatch=0") | |
| execute_process( | |
| COMMAND ctest -j ${N} | |
| WORKING_DIRECTORY ${{ runner.workspace }}/build/avogadrolibs | |
| RESULT_VARIABLE result | |
| ) | |
| if (NOT result EQUAL 0) | |
| message(FATAL_ERROR "Running tests failed!") | |
| endif() | |
| - name: Install the Apple certificate | |
| # From GitHub docs: https://docs.github.com/en/actions/guides/installing-an-apple-certificate-on-macos-runners-for-xcode-development | |
| if: runner.os == 'macOS' | |
| working-directory: ${{ runner.workspace }}/build | |
| env: | |
| BUILD_CERTIFICATE_BASE64: ${{ secrets.BUILD_CERTIFICATE_BASE64 }} | |
| P12_PASSWORD: ${{ secrets.P12_PASSWORD }} | |
| KEYCHAIN_PASSWORD: ${{ secrets.KEYCHAIN_PASSWORD }} | |
| NOTARIZE_USERNAME: ${{ secrets.AC_USERNAME }} | |
| NOTARIZE_PASSWORD: ${{ secrets.AC_PASSWORD }} | |
| CODESIGN_IDENTITY: ${{ secrets.CODESIGN_ID }} | |
| PRODUCT_BUNDLE_IDENTIFIER: cc.avogadro | |
| run: | | |
| # create variables | |
| if [ -n "${P12_PASSWORD}" ]; then | |
| CERTIFICATE_PATH=$RUNNER_TEMP/build_certificate.p12 | |
| KEYCHAIN_PATH=$RUNNER_TEMP/app-signing.keychain-db | |
| # import certificate and provisioning profile from secrets | |
| echo -n "$BUILD_CERTIFICATE_BASE64" | base64 --decode --output $CERTIFICATE_PATH | |
| # create temporary keychain if the cert is non-zero | |
| if [ -s $CERTIFICATE_PATH ]; then | |
| security create-keychain -p "$KEYCHAIN_PASSWORD" $KEYCHAIN_PATH | |
| security set-keychain-settings -lut 21600 $KEYCHAIN_PATH | |
| security unlock-keychain -p "$KEYCHAIN_PASSWORD" $KEYCHAIN_PATH | |
| # import certificate to keychain | |
| security import $CERTIFICATE_PATH -P "$P12_PASSWORD" -A -t cert -f pkcs12 -k $KEYCHAIN_PATH | |
| security list-keychain -d user -s $KEYCHAIN_PATH | |
| # signing occurs via avogadroapp cpack instructions | |
| fi # certificate exists | |
| fi # password exists | |
| - name: Pack | |
| if: matrix.config.artifact != 0 | |
| shell: bash | |
| run: | | |
| if [ -z "${P12_PASSWORD}" ]; then | |
| unset CODESIGN_IDENTITY # to prevent cpack failing when trying to sign | |
| fi | |
| if [ -z "${OPENSSL_ROOT_DIR}" ]; then | |
| unset OPENSSL_ROOT_DIR | |
| fi | |
| cpack ${{ matrix.config.cpack_flags }} | |
| env: | |
| P12_PASSWORD: ${{ secrets.P12_PASSWORD }} | |
| CODESIGN_IDENTITY: ${{ secrets.CODESIGN_ID }} | |
| OPENSSL_ROOT_DIR: ${{ matrix.config.ssl_env }} | |
| working-directory: ${{ runner.workspace }}/build/avogadroapp | |
| - name: AppImage | |
| if: matrix.config.os == 'ubuntu-18.04' | |
| shell: bash | |
| run: | | |
| mkdir appdir | |
| mv prefix appdir/usr | |
| wget -c -nv "https://github.com/probonopd/linuxdeployqt/releases/download/continuous/linuxdeployqt-continuous-x86_64.AppImage" | |
| wget -c -nv "https://github.com/AppImage/AppImageKit/releases/download/continuous/appimagetool-x86_64.AppImage" | |
| chmod a+x *.AppImage | |
| ./linuxdeployqt-continuous-x86_64.AppImage appdir/usr/share/applications/*.desktop -bundle-non-qt-libs -extra-plugins=iconengines | |
| # add the custom AppRun | |
| rm appdir/AppRun | |
| cp ../avogadrolibs/avogadrolibs/scripts/AppImage.sh appdir/AppRun | |
| chmod a+x appdir/AppRun | |
| ./appimagetool-x86_64.AppImage appdir | |
| mv Avogadro2*.AppImage avogadroapp # for upload | |
| # remove the cpack files | |
| rm avogadroapp/Avogadro2*Linux.* | |
| working-directory: ${{ runner.workspace }}/build | |
| - name: Notarize Mac DMG | |
| if: runner.os == 'macOS' | |
| run: | | |
| # check current directory (failing signing) | |
| echo `pwd` | |
| ls -ld | |
| # check if we have the password and the username | |
| if [ -n "${NOTARIZE_PASSWORD}" ] && [ -n "${NOTARIZE_USERNAME}" ]; then | |
| codesign -s "$CODESIGN_IDENTITY" --timestamp Avogadro2*.dmg | |
| npx notarize-cli --file Avogadro2*.dmg | |
| fi | |
| working-directory: ${{ runner.workspace }}/build/avogadroapp | |
| env: | |
| NOTARIZE_USERNAME: ${{ secrets.AC_USERNAME }} | |
| NOTARIZE_PASSWORD: ${{ secrets.AC_PASSWORD }} | |
| CODESIGN_IDENTITY: ${{ secrets.CODESIGN_ID }} | |
| PRODUCT_BUNDLE_IDENTIFIER: cc.avogadro | |
| - name: Upload | |
| if: matrix.config.artifact != 0 | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| path: ${{ runner.workspace }}/build/avogadroapp/Avogadro2*.* | |
| name: ${{ matrix.config.artifact }} | |
| - name: Cleanup | |
| if: ${{ always() }} # To ensure this step runs even when earlier steps fail | |
| shell: bash | |
| run: | | |
| ls -la ./ | |
| rm -rf ./* || true | |
| rm -rf ./.??* || true | |
| ls -la ./ |