ci.yaml

name: "CI"
on:
  pull_request:
  push:
    branches:
      - main

  schedule:
    - cron: "0 7 * * *"

concurrency:
  group: "${{ github.workflow }}-${{ github.ref }}"
  cancel-in-progress: true

defaults:
  run:
    shell: bash -l {0}

jobs:
  tests:
    runs-on: ${{ matrix.OS }}-latest
    name: "tests"
    strategy:
      fail-fast: false
      matrix:
        os: ['ubuntu']
        sql-backend: ["sqlite"]
        python-version:
          - "3.9"
          - "3.10"
          - "3.11"
        include:
          - python-version: "3.11"
            sql-backend: "postgres"

    steps:
      - uses: actions/checkout@v3
      # we use mamba for installing postgres; otherwise we're pip to ensure
      # compatiblity
      - uses: conda-incubator/setup-miniconda@v2
        with:
          miniforge-variant: Mambaforge
          python-version: ${{ matrix.python-version }}
      - run: python -m pip install -e .
        name: "Install"
      - name: "Install database"
        run: ./devtools/${{ sql-backend }}/install.sh
      - name: "Create and start database"
        run: ./devtools/${{ sql-backend }}/create.sh
      - run: python -m pip install pytest pytest-cov
        name: "Install testing tools"
      - run: pytest -v --cov=exorcist --cov-report=xml
        env:
          EXORCIST_TEST_DB: ${{ matrix.sql-version }}
        name: "Run tests"
      - name: codecov
        if: ${{ github.repository == 'OpenFreeEnergy/exorcist'
                && github.event_name != 'schedule' }}
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          file: coverage.xml
          verbose: true