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I get the following error message immediately:
xz: (stdin): Cannot allocate memory ERROR: failed to call xz, please confirm that xz is installed in your system
when I run:
sbatch -c 16 --mem 10000 --wrap "repaq -c -i file_1_trimmed.fastq.gz -I file_2_trimmed.fastq.gz -o file.fpq.xz --compression 9 --thread 16"
I installed repaq and xz with the following commands in a fresh conda environment:
conda install -c bioconda repaq conda install conda-forge::xz
Help would be much appreciated
The text was updated successfully, but these errors were encountered:
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I get the following error message immediately:
when I run:
I installed repaq and xz with the following commands in a fresh conda environment:
Help would be much appreciated
The text was updated successfully, but these errors were encountered: