Added interpolation of results to arbitrary nodes, removed use of scipy.interpolate.interp1d from phase.interp.
#871
Workflow file for this run
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| # Build docs | |
| name: Dymos Docs | |
| on: | |
| # Trigger on push, pull request | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master, develop ] | |
| # Trigger via workflow_dispatch event | |
| workflow_dispatch: | |
| jobs: | |
| test_ubuntu: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 90 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| # baseline versions except with pyoptsparse but no SNOPT | |
| # build docs to verify those that use pyoptsparse do not use SNOPT | |
| - NAME: baseline_no_snopt | |
| PY: '3.11' | |
| NUMPY: '1.26' | |
| SCIPY: '1.13' | |
| PETSc: '3.19' | |
| PYOPTSPARSE: 'v2.11.0' | |
| OPENMDAO: 'latest' | |
| OPTIONAL: '[docs]' | |
| JAX: '0.4.28' | |
| PUBLISH_DOCS: 1 | |
| # make sure the latest versions of things don't break the docs | |
| # sticking with Python 3.12 for now, 3.13 requires NumPy 2.1 which does not work yet with PETSc/pyoptsparse | |
| - NAME: latest | |
| PY: '3.12' | |
| NUMPY: 1 | |
| SCIPY: 1 | |
| PETSc: 3 | |
| PYOPTSPARSE: 'latest' | |
| SNOPT: 7.7 | |
| OPENMDAO: 'dev' | |
| OPTIONAL: '[docs]' | |
| JAX: 'latest' | |
| PUBLISH_DOCS: 0 | |
| steps: | |
| - name: Display run details | |
| run: | | |
| echo "=============================================================" | |
| echo "Run #${GITHUB_RUN_NUMBER}" | |
| echo "Run ID: ${GITHUB_RUN_ID}" | |
| echo "Testing: ${GITHUB_REPOSITORY}" | |
| echo "Triggered by: ${GITHUB_EVENT_NAME}" | |
| echo "Initiated by: ${GITHUB_ACTOR}" | |
| echo "=============================================================" | |
| - name: Create SSH key | |
| shell: bash | |
| env: | |
| SSH_PRIVATE_KEY: ${{secrets.SSH_PRIVATE_KEY}} | |
| SSH_KNOWN_HOSTS: ${{secrets.SSH_KNOWN_HOSTS}} | |
| run: | | |
| mkdir -p ~/.ssh/ | |
| echo "$SSH_PRIVATE_KEY" > ~/.ssh/id_rsa | |
| sudo chmod 600 ~/.ssh/id_rsa | |
| echo "$SSH_KNOWN_HOSTS" > ~/.ssh/known_hosts | |
| - name: Checkout code | |
| uses: actions/checkout@v4 | |
| - name: Fetch tags | |
| run: | | |
| git fetch --prune --unshallow --tags | |
| - name: Setup conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.PY }} | |
| channels: conda-forge | |
| - name: Install Numpy/Scipy | |
| shell: bash -l {0} | |
| run: | | |
| echo "Make sure we are not using anaconda packages" | |
| conda config --remove channels defaults | |
| echo "=============================================================" | |
| echo "Install Numpy/Scipy" | |
| echo "=============================================================" | |
| conda install numpy=${{ matrix.NUMPY }} scipy=${{ matrix.SCIPY }} -q -y | |
| - name: Install jax | |
| if: matrix.JAX | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install jax" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.JAX }}" == "latest" ]]; then | |
| python -m pip install jaxlib jax | |
| else | |
| python -m pip install jaxlib==${{ matrix.JAX }} jax==${{ matrix.JAX }} | |
| fi | |
| - name: Install PETSc | |
| if: matrix.PETSc | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install PETSc" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.OPENMPI }}" && "${{ matrix.MPI4PY }}" ]]; then | |
| conda install openmpi=${{ matrix.OPENMPI }} mpi4py=${{ matrix.MPI4PY }} petsc4py=${{ matrix.PETSc }} -q -y | |
| elif [[ "${{ matrix.MPI4PY }}" ]]; then | |
| conda install mpi4py=${{ matrix.MPI4PY }} petsc4py=${{ matrix.PETSc }} -q -y | |
| else | |
| conda install mpi4py petsc4py=${{ matrix.PETSc }} -q -y | |
| fi | |
| echo "-----------------------" | |
| echo "Quick test of mpi4py:" | |
| mpirun -n 2 python -c "from mpi4py import MPI; print(f'Rank: {MPI.COMM_WORLD.rank}')" | |
| echo "-----------------------" | |
| echo "Quick test of petsc4py:" | |
| mpirun -n 2 python -c "import numpy; from mpi4py import MPI; comm = MPI.COMM_WORLD; import petsc4py; petsc4py.init(); x = petsc4py.PETSc.Vec().createWithArray(numpy.ones(5)*comm.rank, comm=comm); print(x.getArray())" | |
| echo "-----------------------" | |
| echo "OMPI_MCA_rmaps_base_oversubscribe=1" >> $GITHUB_ENV | |
| - name: Install pyOptSparse | |
| if: matrix.PYOPTSPARSE | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install pyoptsparse" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.PYOPTSPARSE }}" == "conda-forge" ]]; then | |
| if [[ "${{ matrix.SNOPT }}" ]]; then | |
| echo "SNOPT ${{ matrix.SNOPT }} was requested but is not available on conda-forge" | |
| fi | |
| conda install -c conda-forge pyoptsparse | |
| else | |
| pip install git+https://github.com/OpenMDAO/build_pyoptsparse | |
| if [[ "${{ matrix.PYOPTSPARSE }}" == "latest" ]]; then | |
| LATEST_URL=`curl -fsSLI -o /dev/null -w %{url_effective} https://github.com/mdolab/pyoptsparse/releases/latest` | |
| LATEST_VER=`echo $LATEST_URL | awk '{split($0,a,"/tag/"); print a[2]}'` | |
| BRANCH="-b $LATEST_VER" | |
| else | |
| BRANCH="-b ${{ matrix.PYOPTSPARSE }}" | |
| fi | |
| if [[ "${{ matrix.PAROPT }}" ]]; then | |
| PAROPT="-a" | |
| fi | |
| if [[ "${{ matrix.SNOPT }}" == "7.7" && "${{ secrets.SNOPT_LOCATION_77 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.7 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_77 }} SNOPT | |
| SNOPT="-s SNOPT/src" | |
| elif [[ "${{ matrix.SNOPT }}" == "7.2" && "${{ secrets.SNOPT_LOCATION_72 }}" ]]; then | |
| echo " > Secure copying SNOPT 7.2 over SSH" | |
| mkdir SNOPT | |
| scp -qr ${{ secrets.SNOPT_LOCATION_72 }} SNOPT | |
| SNOPT="-s SNOPT/source" | |
| elif [[ "${{ matrix.SNOPT }}" ]]; then | |
| echo "SNOPT version ${{ matrix.SNOPT }} was requested but source is not available" | |
| fi | |
| build_pyoptsparse $BRANCH $PAROPT $SNOPT | |
| fi | |
| - name: Install OpenMDAO | |
| if: matrix.OPENMDAO | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install OpenMDAO" | |
| echo "=============================================================" | |
| if [[ "${{ matrix.OPENMDAO }}" == "dev" ]]; then | |
| pip install git+https://github.com/OpenMDAO/OpenMDAO | |
| elif [[ "${{ matrix.OPENMDAO }}" == "latest" ]]; then | |
| pip install openmdao | |
| else | |
| pip install openmdao==${{ matrix.OPENMDAO }} | |
| fi | |
| - name: Install bokeh | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install additional packages for testing/coverage" | |
| echo "=============================================================" | |
| conda install bokeh | |
| - name: Install Dymos | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Install Dymos" | |
| echo "=============================================================" | |
| pip install .${{ matrix.OPTIONAL }} | |
| - name: Display environment info | |
| id: env_info | |
| shell: bash -l {0} | |
| run: | | |
| conda info | |
| conda list | |
| echo "=============================================================" | |
| echo "Check installed versions of Python, Numpy and Scipy" | |
| echo "=============================================================" | |
| python -c "import sys; assert str(sys.version).startswith(str(${{ matrix.PY }})), \ | |
| f'Python version {sys.version} is not the requested version (${{ matrix.PY }})'" | |
| python -c "import numpy; assert str(numpy.__version__).startswith(str(${{ matrix.NUMPY }})), \ | |
| f'Numpy version {numpy.__version__} is not the requested version (${{ matrix.NUMPY }})'" | |
| python -c "import scipy; assert str(scipy.__version__).startswith(str(${{ matrix.SCIPY }})), \ | |
| f'Scipy version {scipy.__version__} is not the requested version (${{ matrix.SCIPY }})'" | |
| - name: Display dependency tree | |
| if: failure() && steps.env_info.outcome == 'failure' | |
| run: | | |
| pip install pipdeptree | |
| pipdeptree | |
| - name: Build docs | |
| id: build_docs | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Building Docs" | |
| echo "=============================================================" | |
| cd docs | |
| export PYDEVD_DISABLE_FILE_VALIDATION=1 | |
| jupyter-book build -W --keep-going dymos_book | |
| - name: Display doc build reports | |
| continue-on-error: True | |
| if: failure() && steps.build_docs.outcome == 'failure' | |
| run: | | |
| echo $PWD | |
| cd docs | |
| find dymos_book/_build/html/reports/ -type f -name '*.log' \ | |
| -exec echo "#################################################################" \; \ | |
| -exec echo {} \; \ | |
| -exec echo "#################################################################" \; \ | |
| -exec cat {} \; | |
| - name: Publish docs to github.io | |
| if: | | |
| github.event_name == 'push' && github.ref == 'refs/heads/master' && | |
| matrix.PUBLISH_DOCS == '1' | |
| shell: bash -l {0} | |
| run: | | |
| echo "=============================================================" | |
| echo "Publishing Docs to github.io" | |
| echo "=============================================================" | |
| pip install ghp-import | |
| cd $HOME/work/dymos/dymos | |
| ghp-import -n -p -f docs/dymos_book/_build/html | |
| - name: Publish docs to openmdao.org | |
| if: | | |
| github.event_name == 'push' && github.ref == 'refs/heads/master' && | |
| matrix.PUBLISH_DOCS == '1' | |
| env: | |
| DOCS_LOCATION: ${{ secrets.DOCS_LOCATION }} | |
| shell: bash -l {0} | |
| run: | | |
| if [[ "${#DOCS_LOCATION}" ]]; then | |
| echo "=============================================================" | |
| echo "Install version of openssl compatible with hosting service" | |
| echo "=============================================================" | |
| conda install -c conda-forge 'openssl=3.0' | |
| echo "=============================================================" | |
| echo "Publishing Docs to openmdao.org" | |
| echo "=============================================================" | |
| echo "Publish docs" | |
| cd $HOME/work/dymos/dymos | |
| python -m openmdao.docs.upload_doc_version docs/dymos_book/_build/html/ ${{ secrets.DOCS_LOCATION }} | |
| else | |
| echo "Docs destination not available." | |
| fi |