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Merge pull request #147 from axelwalter/main
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Update UmetaFlow
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@axelwalter
axelwalter authored Jan 27, 2025
2 parents a6cc0a7 + 531392e commit b975f76
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion umetaflow-gui
Submodule umetaflow-gui updated 58 files
+53 −36 .github/workflows/build-windows-executable-app-with-pyinstaller.yaml
+225 −49 .github/workflows/build-windows-executable-app.yaml
+155 −15 .github/workflows/test-win-exe-w-embed-py.yaml
+25 −0 .github/workflows/workflow-tests.yml
+20 −8 Dockerfile
+15 −6 Dockerfile_simple
+93 −16 README.md
+6 −5 app.py
+ − assets/GNPS_logo.png
+ − assets/OpenMS.png
+ − assets/UmetaFlow Chapter Overview.png
+ − assets/annotations.png
+0 −45 assets/default-params.json
+ − assets/metabolomics-preprocessing.png
+ − assets/ms2query_logo.png
+ − assets/openms.ico
+456 −0 assets/openms_license.rtf
+ − assets/requant.png
+ − assets/sirius.png
+9 −7 content/extracted_ion_chromatograms.py
+14 −13 content/file_upload.py
+25 −32 content/quickstart.py
+14 −2 content/raw_data_viewer.py
+26 −0 content/umetaflow_configure.py
+0 −349 content/umetaflow_pyopenms.py
+10 −0 content/umetaflow_results.py
+11 −0 content/umetaflow_run.py
+0 −22 content/umetaflow_topp.py
+37 −26 default-parameters.json
+19 −0 docker-compose.yml
+3 −1 environment.yml
+ − example-data/.DS_Store
+ − example-data/._.DS_Store
+ − gdpr_consent/.DS_Store
+ − gdpr_consent/._.DS_Store
+1,620 −1,620 gdpr_consent/dist/bundle.js
+1 −1 gdpr_consent/package-lock.json
+1 −1 requirements.txt
+3 −0 settings.json
+ − src/.DS_Store
+681 −501 src/UmetaFlowTOPPWorkflow.py
+1 −3 src/common/captcha_.py
+11 −25 src/common/common.py
+0 −684 src/core.py
+73 −29 src/fileupload.py
+373 −0 src/metabolomicsresults.py
+3 −1 src/python-tools/example.py
+4 −0 src/python-tools/export_consensus_df.py
+1 −9 src/python-tools/export_ffmid_df.py
+3 −4 src/python-tools/zip-result-files.py
+0 −295 src/umetaflow.py
+106 −94 src/view.py
+0 −423 src/viewmetabolomics.py
+5 −4 src/workflow/CommandExecutor.py
+19 −9 src/workflow/ParameterManager.py
+212 −69 src/workflow/StreamlitUI.py
+1 −1 src/workflow/WorkflowManager.py
+8 −0 test.py

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