From efff873a6aa2c8978e8d78eae9b575b3fa2e8b2d Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:44:31 +0200
Subject: [PATCH 01/93] Upgrade Jupyterlab to version 4.2.3

---
 packages/grid/syft-client/syft.Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/syft-client/syft.Dockerfile b/packages/grid/syft-client/syft.Dockerfile
index abfed99480a..e7ca9badd79 100644
--- a/packages/grid/syft-client/syft.Dockerfile
+++ b/packages/grid/syft-client/syft.Dockerfile
@@ -17,7 +17,7 @@ RUN apk update && apk upgrade && \
 COPY ./syft /tmp/syft
 
 RUN --mount=type=cache,target=/root/.cache,sharing=locked \
-    pip install --user jupyterlab==4.2.2 /tmp/syft
+    pip install --user jupyterlab==4.2.3 /tmp/syft
 
 # ==================== [Final] Setup Syft Client ==================== #
 

From 2180c6dcf0ab67d81d1af7830c52bc8967989ffb Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:46:32 +0200
Subject: [PATCH 02/93] Update uvicorn to version 0.30.1 and fastapi to version
 0.111.0

---
 packages/grid/seaweedfs/requirements.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index c4ecc044267..fc1b1433cc7 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
-fastapi==0.110.0
+fastapi==0.111.0
 pyyaml==6.0.1
 supervisor==4.2.5
-uvicorn==0.27.1
+uvicorn==0.30.1

From 033be6ceb643659a9a5b1e073d18084d61c27954 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:48:37 +0200
Subject: [PATCH 03/93] Update seaweedfs to version 3.68

---
 packages/grid/seaweedfs/seaweedfs.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/seaweedfs.dockerfile b/packages/grid/seaweedfs/seaweedfs.dockerfile
index 8e1c23ba843..8e7f53b1897 100644
--- a/packages/grid/seaweedfs/seaweedfs.dockerfile
+++ b/packages/grid/seaweedfs/seaweedfs.dockerfile
@@ -1,4 +1,4 @@
-ARG SEAWEEDFS_VERSION="3.64"
+ARG SEAWEEDFS_VERSION="3.68"
 FROM chrislusf/seaweedfs:${SEAWEEDFS_VERSION}_large_disk
 
 WORKDIR /root/swfs

From 8d8ce54babc798ef43a9bf529ebca7cd4de5d9c9 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:51:11 +0200
Subject: [PATCH 04/93] Upgrade typing_extensions to version 4.12.2

---
 packages/syftcli/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syftcli/setup.py b/packages/syftcli/setup.py
index 7275830e471..bbc4f9448e8 100644
--- a/packages/syftcli/setup.py
+++ b/packages/syftcli/setup.py
@@ -9,7 +9,7 @@
     "pyyaml==6.0.1",
     "packaging==21.3",
     "typer[all]==0.9.0",
-    "typing_extensions==4.6.3",
+    "typing_extensions==4.12.2",
 ]
 
 build_packages = [

From d84d1bc5bc56cbafe04f6bb6a090bcf0f1e2be16 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:52:47 +0200
Subject: [PATCH 05/93] Upgrade typer to version 0.12.3

---
 packages/syftcli/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syftcli/setup.py b/packages/syftcli/setup.py
index bbc4f9448e8..fae41bb4e02 100644
--- a/packages/syftcli/setup.py
+++ b/packages/syftcli/setup.py
@@ -8,7 +8,7 @@
     "requests==2.32.3",
     "pyyaml==6.0.1",
     "packaging==21.3",
-    "typer[all]==0.9.0",
+    "typer[all]==0.12.3",
     "typing_extensions==4.12.2",
 ]
 

From b57f47b40d37ce23faef7868b2b62f84a72bd351 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:53:33 +0200
Subject: [PATCH 06/93] Upgrade packaging to version 24.1

---
 packages/syftcli/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syftcli/setup.py b/packages/syftcli/setup.py
index fae41bb4e02..59b052050ce 100644
--- a/packages/syftcli/setup.py
+++ b/packages/syftcli/setup.py
@@ -7,7 +7,7 @@
 packages = [
     "requests==2.32.3",
     "pyyaml==6.0.1",
-    "packaging==21.3",
+    "packaging==24.1",
     "typer[all]==0.12.3",
     "typing_extensions==4.12.2",
 ]

From 987c2fa734d2610069d4a819da6796101196dd4f Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:55:15 +0200
Subject: [PATCH 07/93] Upgrade pyinstaller to version 6.8.0

---
 packages/syftcli/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syftcli/setup.py b/packages/syftcli/setup.py
index 59b052050ce..a8ee36b9a2d 100644
--- a/packages/syftcli/setup.py
+++ b/packages/syftcli/setup.py
@@ -13,7 +13,7 @@
 ]
 
 build_packages = [
-    "pyinstaller==5.13.0",
+    "pyinstaller==6.8.0",
 ]
 
 dev_packages = ["pytest"] + build_packages

From 79a9cf6c847c37ee78e228d3517dbdc19062d026 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:57:05 +0200
Subject: [PATCH 08/93] Upgrade transformers to version 4.42.3

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 6c8ed7d741b..7566a8e75f2 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -81,7 +81,7 @@ exclude =
 
 [options.extras_require]
 data_science =
-    transformers==4.41.2
+    transformers==4.41.3
     opendp==0.9.2
     evaluate==0.4.2
     recordlinkage==0.16

From 7f3d4c49c0f95cd249e8eded6320fedcd6cd7274 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 04:58:40 +0200
Subject: [PATCH 09/93] Update opendp to version 0.10.0

---
 packages/syft/setup.cfg | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 7566a8e75f2..626ed4beff0 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -81,8 +81,8 @@ exclude =
 
 [options.extras_require]
 data_science =
-    transformers==4.41.3
-    opendp==0.9.2
+    transformers==4.42.3
+    opendp==0.10.0
     evaluate==0.4.2
     recordlinkage==0.16
     # backend.dockerfile installs torch separately, so update the version over there as well!

From 96b92530574733bcee85e7e6959e8177cff986ff Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:02:04 +0200
Subject: [PATCH 10/93] Upgrade typing_extensions to version 4.12.2

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 626ed4beff0..b02ef37cdb7 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -43,7 +43,7 @@ syft =
     result==0.16.1
     tqdm==4.66.4
     typeguard==4.1.5
-    typing_extensions==4.12.0
+    typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
     uvicorn[standard]==0.30.0
     markdown==3.5.2

From 9eaf37a0b3364e22fd33c0603917263142f9b1a0 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:02:40 +0200
Subject: [PATCH 11/93] Upgrade Torch to version 2.3.1

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index b02ef37cdb7..e77e3cd0b4b 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -86,7 +86,7 @@ data_science =
     evaluate==0.4.2
     recordlinkage==0.16
     # backend.dockerfile installs torch separately, so update the version over there as well!
-    torch==2.2.2
+    torch==2.3.1
 
 dev =
     %(test_plugins)s

From 0d60a53433b4a923d926a0b83668196d26f358e0 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:03:18 +0200
Subject: [PATCH 12/93] Upgrade bandit to version 1.7.9

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index e77e3cd0b4b..29a7295e848 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -91,7 +91,7 @@ data_science =
 dev =
     %(test_plugins)s
     %(telemetry)s
-    bandit==1.7.8
+    bandit==1.7.9
     ruff==0.4.7
     importlib-metadata==7.1.0
     isort==5.13.2

From b591d3a5b9ba66e99bb0c1db72593ee5f904a65b Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:03:58 +0200
Subject: [PATCH 13/93] Upgrade Ruff to version 0.5.0

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 29a7295e848..c307039619a 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -92,7 +92,7 @@ dev =
     %(test_plugins)s
     %(telemetry)s
     bandit==1.7.9
-    ruff==0.4.7
+    ruff==0.5.0
     importlib-metadata==7.1.0
     isort==5.13.2
     mypy==1.10.0

From 87eb07d54c3051a99be99a98a28c603f160f2709 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:05:05 +0200
Subject: [PATCH 14/93] Upgrade mypy to vesion 1.10.1

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index c307039619a..901f9397750 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -95,7 +95,7 @@ dev =
     ruff==0.5.0
     importlib-metadata==7.1.0
     isort==5.13.2
-    mypy==1.10.0
+    mypy==1.10.1
     pre-commit==3.7.1
     safety>=2.4.0b2
 

From ba4f79ab30b666bb733cf45243d6e6b3d4736102 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:10:49 +0200
Subject: [PATCH 15/93] Upgrade uvicorn to version 0.30.1

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 901f9397750..eb0e5c4a7cd 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -45,7 +45,7 @@ syft =
     typeguard==4.1.5
     typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
-    uvicorn[standard]==0.30.0
+    uvicorn[standard]==0.30.1
     markdown==3.5.2
     fastapi==0.111.0
     psutil==6.0.0

From 3d76b083f6298bad7cb99771ffdd0f9d0ce04db8 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 29 Jun 2024 05:39:28 +0200
Subject: [PATCH 16/93] Upgrade fastapi to version 0.111.0 and Uvicorn to
 version 0.30.1

---
 packages/grid/enclave/attestation/requirements.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index bd5059ad68d..d23628f3b24 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
-fastapi==0.110.0
+fastapi==0.111.0
 loguru==0.7.2
-uvicorn[standard]==0.27.1
+uvicorn[standard]==0.30.1

From fc09f5cb28938672cb8fe66b5e9eac2541a07153 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sun, 30 Jun 2024 07:45:56 +0200
Subject: [PATCH 17/93] Update torch to version 2.3.1 and uv to version 0.2.17

---
 packages/grid/backend/backend.dockerfile | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 606569c49f4..2737c69ee11 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,6 +1,6 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.13-r0"
-ARG TORCH_VERSION="2.2.2"
+ARG UV_VERSION="0.2.17-r0"
+ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links
 # https://github.com/wolfi-dev/os/blob/main/python-3.12.yaml

From b7e58fa9716aa59cc1f51141bc5351d74ef93fb2 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sun, 30 Jun 2024 18:54:32 +0200
Subject: [PATCH 18/93] Update default.env

---
 packages/grid/default.env | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/default.env b/packages/grid/default.env
index 6ae9748bfef..efd50790ccc 100644
--- a/packages/grid/default.env
+++ b/packages/grid/default.env
@@ -75,7 +75,7 @@ JAX_ENABLE_X64=True
 
 # Mongo
 MONGO_IMAGE=mongo
-MONGO_VERSION="7.0.8"
+MONGO_VERSION="7.0.12"
 MONGO_HOST=mongo
 MONGO_PORT=27017
 MONGO_USERNAME=root

From 148a24b8682211f77180b678217f551648e001f4 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sun, 30 Jun 2024 19:15:08 +0200
Subject: [PATCH 19/93] Update mongo to version 7.0.12

---
 .github/workflows/container-scan.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/container-scan.yml b/.github/workflows/container-scan.yml
index 303eb11bc40..15a3307eaa3 100644
--- a/.github/workflows/container-scan.yml
+++ b/.github/workflows/container-scan.yml
@@ -238,7 +238,7 @@ jobs:
         continue-on-error: true
         uses: aquasecurity/trivy-action@master
         with:
-          image-ref: "mongo:7.0.0"
+          image-ref: "mongo:7.0.12"
           format: "cyclonedx"
           output: "mongo-trivy-results.sbom.json"
           timeout: "10m0s"
@@ -255,7 +255,7 @@ jobs:
         continue-on-error: true
         uses: aquasecurity/trivy-action@master
         with:
-          image-ref: "mongo:7.0.0"
+          image-ref: "mongo:7.0.12"
           format: "sarif"
           output: "trivy-results.sarif"
           timeout: "10m0s"
@@ -281,7 +281,7 @@ jobs:
           # This is where you will need to introduce the Snyk API token created with your Snyk account
           SNYK_TOKEN: ${{ secrets.SNYK_TOKEN }}
         with:
-          image: mongo:7.0.0
+          image: mongo:7.0.12
           args: --sarif-file-output=snyk-code.sarif
 
         # Replace any "undefined" security severity values with 0. The undefined value is used in the case

From a1a9721b26cb51eabb9d397097bfeba204a28ac6 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sun, 30 Jun 2024 21:04:26 +0200
Subject: [PATCH 20/93] Update uv to version 0.2.18

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 2737c69ee11..d23f110f929 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.17-r0"
+ARG UV_VERSION="0.2.18-r0"
 ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links

From c871b86e0e41b0673a31e06ae47238e5ee8031ee Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 1 Jul 2024 04:09:33 +0200
Subject: [PATCH 21/93] revert

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index d23f110f929..2737c69ee11 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.18-r0"
+ARG UV_VERSION="0.2.17-r0"
 ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links

From 5098bae0b0ecffc0e0e9ff40535832dff6669418 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Thu, 11 Jul 2024 09:43:27 +0200
Subject: [PATCH 22/93] Update seaweedfs to version 3.69

---
 packages/grid/seaweedfs/seaweedfs.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/seaweedfs.dockerfile b/packages/grid/seaweedfs/seaweedfs.dockerfile
index 8e7f53b1897..e345a1a5817 100644
--- a/packages/grid/seaweedfs/seaweedfs.dockerfile
+++ b/packages/grid/seaweedfs/seaweedfs.dockerfile
@@ -1,4 +1,4 @@
-ARG SEAWEEDFS_VERSION="3.68"
+ARG SEAWEEDFS_VERSION="3.69"
 FROM chrislusf/seaweedfs:${SEAWEEDFS_VERSION}_large_disk
 
 WORKDIR /root/swfs

From aa2c1d193652c3a81c61e90822ccfd8ee217f922 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:24:45 +0200
Subject: [PATCH 23/93] Update requirements.txt

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index fc1b1433cc7..cec30720a61 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
-fastapi==0.111.0
+fastapi==0.111.1
 pyyaml==6.0.1
 supervisor==4.2.5
 uvicorn==0.30.1

From a1dff5287273f8dc3432f699ae7bb9d8383eacab Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:25:38 +0200
Subject: [PATCH 24/93] Update setup.cfg

---
 packages/syft/setup.cfg | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 79afe871e11..5b88cf22703 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -47,7 +47,7 @@ syft =
     sherlock[filelock]==0.4.1
     uvicorn[standard]==0.30.1
     markdown==3.5.2
-    fastapi==0.111.0
+    fastapi==0.111.1
     psutil==6.0.0
     itables==1.7.1
     argon2-cffi==23.1.0
@@ -99,7 +99,7 @@ dev =
     isort==5.13.2
     mypy==1.10.1
     pre-commit==3.7.1
-    ruff==0.5.1
+    ruff==0.5.2
     safety>=2.4.0b2
 
 telemetry =

From 0dd2a7161da5a341aac45967b3d059493eb3eab5 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:28:08 +0200
Subject: [PATCH 25/93] Update transformers

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 5b88cf22703..ca99b2ecad0 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -83,7 +83,7 @@ exclude =
 
 [options.extras_require]
 data_science =
-    transformers==4.42.3
+    transformers==4.42.4
     opendp==0.10.0
     evaluate==0.4.2
     recordlinkage==0.16

From 68fffb7a33198480b4c14c639ff71c589092c8ee Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:28:54 +0200
Subject: [PATCH 26/93] Update backend.dockerfile

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 6d5a8031d05..2bda505e0f5 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.17-r0"
+ARG UV_VERSION="0.2.25-r0"
 ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links

From 06f15b2231823e608beb6ac09f800f71447431dc Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:29:37 +0200
Subject: [PATCH 27/93] Update fastapi to version 0.111.1

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index d23628f3b24..ff18b2c2613 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
-fastapi==0.111.0
+fastapi==0.111.1
 loguru==0.7.2
 uvicorn[standard]==0.30.1

From c46988e1bdde73e392f3f81fa28cd77d8d90183f Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:32:33 +0200
Subject: [PATCH 28/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 92b64b9d4b1..a5980bf2b1a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.5.0
+    rev: v4.6.0
     hooks:
       - id: check-ast
         exclude: ^(packages/syft/tests/mongomock)
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.4.7"
+    rev: "v0.5.2"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]
@@ -94,7 +94,7 @@ repos:
         types_or: [python, pyi, jupyter]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         name: "mypy: syft-cli"
@@ -119,7 +119,7 @@ repos:
           ]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         name: "mypy: grid"
@@ -144,7 +144,7 @@ repos:
           ]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         name: "mypy: syft"

From dd28cfa7391f324c00174f88c7c33670ce85a8a4 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 17 Jul 2024 14:41:21 +0200
Subject: [PATCH 29/93] Update ruff.toml

---
 ruff.toml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/ruff.toml b/ruff.toml
index bdf2c46b9cf..d8c732b2296 100644
--- a/ruff.toml
+++ b/ruff.toml
@@ -20,6 +20,7 @@ select = [
 ignore = [
     "B904",  # check for raise statements in exception handlers that lack a from clause
     "B905",  # zip() without an explicit strict= parameter
+    "E721",
 ]
 
 [lint.per-file-ignores]

From 032ecf0199a3071a30cea1a35b25aababcd78f6d Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Fri, 19 Jul 2024 19:30:09 +0200
Subject: [PATCH 30/93] Update backend.dockerfile

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 2bda505e0f5..f2facd89546 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.25-r0"
+ARG UV_VERSION="0.2.26-r0"
 ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links

From 251db92775a36bd5f900abb936bf02f38cc12bd1 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 20 Jul 2024 06:49:18 +0200
Subject: [PATCH 31/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index a5980bf2b1a..31c15dba78e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.2"
+    rev: "v0.5.23"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From f4fb4b33a83af092746ff5f67dbea8c7a40cdfbc Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 20 Jul 2024 06:50:45 +0200
Subject: [PATCH 32/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 31c15dba78e..1e8df678c0b 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.23"
+    rev: "v0.5.3"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From 255184f4dba3f395ee410b69fa63ff9995056b38 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 20 Jul 2024 06:51:59 +0200
Subject: [PATCH 33/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 757690d8550..765bee5e089 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -99,7 +99,7 @@ dev =
     isort==5.13.2
     mypy==1.10.1
     pre-commit==3.7.1
-    ruff==0.5.2
+    ruff==0.5.3
     safety>=2.4.0b2
 
 telemetry =

From 5e334ef000ce165cf6acf1c60e793cd951057d16 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 20 Jul 2024 07:22:44 +0200
Subject: [PATCH 34/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 1e8df678c0b..8fbb60f785d 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -94,7 +94,7 @@ repos:
         types_or: [python, pyi, jupyter]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.1
+    rev: v1.11.0
     hooks:
       - id: mypy
         name: "mypy: syft-cli"

From d72fdc3520ff184d867cd8bcb0064dc15c20891a Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 20 Jul 2024 07:23:21 +0200
Subject: [PATCH 35/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 8fbb60f785d..ac20b4e3a10 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -119,7 +119,7 @@ repos:
           ]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.1
+    rev: v1.11.0
     hooks:
       - id: mypy
         name: "mypy: grid"
@@ -144,7 +144,7 @@ repos:
           ]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.1
+    rev: v1.11.0
     hooks:
       - id: mypy
         name: "mypy: syft"

From 88a6f8391fa9b6499fb0e88652e498c0ac1cfc11 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Sat, 20 Jul 2024 13:14:04 +0200
Subject: [PATCH 36/93] mypy revert

---
 .pre-commit-config.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ac20b4e3a10..1e8df678c0b 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -94,7 +94,7 @@ repos:
         types_or: [python, pyi, jupyter]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         name: "mypy: syft-cli"
@@ -119,7 +119,7 @@ repos:
           ]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         name: "mypy: grid"
@@ -144,7 +144,7 @@ repos:
           ]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         name: "mypy: syft"

From eb5b56c4f97d50ac20374623ecdf874a07d9f7e2 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 10:42:37 +0200
Subject: [PATCH 37/93] update ruff to version 0.5.4

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 1e8df678c0b..5e2e0170233 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.3"
+    rev: "v0.5.4"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From cf4d0d9d9f8cadc589f68b2403e00409c384a7ef Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 10:44:43 +0200
Subject: [PATCH 38/93] Update ruff to version 0.5.4

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 765bee5e089..bd9e6431c45 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -99,7 +99,7 @@ dev =
     isort==5.13.2
     mypy==1.10.1
     pre-commit==3.7.1
-    ruff==0.5.3
+    ruff==0.5.4
     safety>=2.4.0b2
 
 telemetry =

From 1258a56889f44efa48bb911debbe52c9f66b74eb Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 10:47:38 +0200
Subject: [PATCH 39/93] update uv to version 0.2.28

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index f2facd89546..1ec611a6bf1 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.26-r0"
+ARG UV_VERSION="0.2.28-r0"
 ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links

From 43b34a2361ca5ec1538ebcd08d796f7e5183e3ae Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 14:06:50 +0200
Subject: [PATCH 40/93] Update requests and setuptools version

setuptools 65.5.0 -> 70.0.0
requests 0.32.0 -> 0.32.3
---
 docs/requirements.txt | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index b16716ced72..60e06eef956 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -4,8 +4,8 @@ jinja2>=3.1.3 # not directly required, pinned by Snyk to avoid a vulnerability
 markupsafe==2.0.1
 pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
-requests>=2.32.0 # not directly required, pinned by Snyk to avoid a vulnerability
-setuptools>=65.5.1 # not directly required, pinned by Snyk to avoid a vulnerability
+requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=70.0.0 # not directly required, pinned by Snyk to avoid a vulnerability
 sphinx==4.3.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1

From f94a096b18a26dd3702e0f156f4e214f66b35840 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 19:20:05 +0200
Subject: [PATCH 41/93] Update setuptools to version 71.1.0

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index 60e06eef956..e5f1704c704 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -5,7 +5,7 @@ markupsafe==2.0.1
 pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
-setuptools>=70.0.0 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=71.1.0 # not directly required, pinned by Snyk to avoid a vulnerability
 sphinx==4.3.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1

From c2c85288b88c9929bfae4b22d625090f74254eb2 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 20:26:30 +0200
Subject: [PATCH 42/93] Update requirements.txt

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index ff18b2c2613..117ecc574a7 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
 fastapi==0.111.1
 loguru==0.7.2
-uvicorn[standard]==0.30.1
+uvicorn[standard]==0.30.3

From 855ce421a968d2f43b15cc2080a025c056da5681 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 20:26:51 +0200
Subject: [PATCH 43/93] Update requirements.txt

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index cec30720a61..77ec3f7941c 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
 fastapi==0.111.1
 pyyaml==6.0.1
 supervisor==4.2.5
-uvicorn==0.30.1
+uvicorn==0.30.3

From 32c8561cdcb9569f5d37b3a60acfb0b18c5dc6ad Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 20:28:06 +0200
Subject: [PATCH 44/93] Update jupyterlab tu version 4.2.4

---
 packages/grid/syft-client/syft.Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/syft-client/syft.Dockerfile b/packages/grid/syft-client/syft.Dockerfile
index e7ca9badd79..0e6b0dd5800 100644
--- a/packages/grid/syft-client/syft.Dockerfile
+++ b/packages/grid/syft-client/syft.Dockerfile
@@ -17,7 +17,7 @@ RUN apk update && apk upgrade && \
 COPY ./syft /tmp/syft
 
 RUN --mount=type=cache,target=/root/.cache,sharing=locked \
-    pip install --user jupyterlab==4.2.3 /tmp/syft
+    pip install --user jupyterlab==4.2.4 /tmp/syft
 
 # ==================== [Final] Setup Syft Client ==================== #
 

From 7df31329b8ad4633a3c08006727ae38fc82bd654 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 20:28:27 +0200
Subject: [PATCH 45/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 5abbe2357f0..f3f623eb246 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -45,7 +45,7 @@ syft =
     typeguard==4.1.5
     typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
-    uvicorn[standard]==0.30.1
+    uvicorn[standard]==0.30.3
     markdown==3.5.2
     fastapi==0.111.1
     psutil==6.0.0

From b24d7118ceb8068cc88281e55b9520495edb9a7c Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 24 Jul 2024 20:35:13 +0200
Subject: [PATCH 46/93] Update transformers to version 4.43.2

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index f3f623eb246..2efd8bfb3e4 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -83,7 +83,7 @@ exclude =
 
 [options.extras_require]
 data_science =
-    transformers==4.42.4
+    transformers==4.43.2
     opendp==0.10.0
     evaluate==0.4.2
     recordlinkage==0.16

From 39c78cc5e39bd88ceded9ff8795b00ccea15157b Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Thu, 25 Jul 2024 15:43:01 +0200
Subject: [PATCH 47/93] Update requirements.txt

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index e5f1704c704..ed7858006dc 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -6,7 +6,7 @@ pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
 setuptools>=71.1.0 # not directly required, pinned by Snyk to avoid a vulnerability
-sphinx==4.3.0
+sphinx==4.3.2
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1
 sphinx-copybutton==0.4.0

From 8ad24fd5dc670a02bfd11dd7c2072cff351aaa3a Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Thu, 25 Jul 2024 15:45:57 +0200
Subject: [PATCH 48/93] Update requirements.txt

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index ed7858006dc..305db70c195 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -6,7 +6,7 @@ pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
 setuptools>=71.1.0 # not directly required, pinned by Snyk to avoid a vulnerability
-sphinx==4.3.2
+sphinx==4.5.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1
 sphinx-copybutton==0.4.0

From da8d75898f8c817b7bdcd924b08ee56e4645d6cc Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Fri, 26 Jul 2024 17:16:50 +0200
Subject: [PATCH 49/93] Update pytorch to version 2.4.0

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 1ec611a6bf1..1205539acf3 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,6 +1,6 @@
 ARG PYTHON_VERSION="3.12"
 ARG UV_VERSION="0.2.28-r0"
-ARG TORCH_VERSION="2.3.1"
+ARG TORCH_VERSION="2.4.0"
 
 # wolfi-os pkg definition links
 # https://github.com/wolfi-dev/os/blob/main/python-3.12.yaml

From 9606f56a43ec88a719dab54d035441652d783b71 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Fri, 26 Jul 2024 17:18:13 +0200
Subject: [PATCH 50/93] Update torch to version 2.4.0

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 1650ab7443d..4c36348df7e 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -88,7 +88,7 @@ data_science =
     evaluate==0.4.2
     recordlinkage==0.16
     # backend.dockerfile installs torch separately, so update the version over there as well!
-    torch==2.3.1
+    torch==2.4.0
 
 dev =
     %(test_plugins)s

From de1f89d35321ace6b39159f3a545624ec3d95eef Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Fri, 26 Jul 2024 22:18:07 +0200
Subject: [PATCH 51/93] Update uv to version 0.2.30

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 1205539acf3..1270a28badd 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.28-r0"
+ARG UV_VERSION="0.2.30-r0"
 ARG TORCH_VERSION="2.4.0"
 
 # wolfi-os pkg definition links

From e6fb549914e43a99cab7ebe24f26ddd9f6eb4099 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Fri, 26 Jul 2024 22:19:09 +0200
Subject: [PATCH 52/93] Update ruff to version 0.5.5

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index fa0d62c481c..be3ca6c5d8e 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -99,7 +99,7 @@ dev =
     isort==5.13.2
     mypy==1.10.1
     pre-commit==3.7.1
-    ruff==0.5.4
+    ruff==0.5.5
     safety>=2.4.0b2
 
 telemetry =

From 64ac99ae0100bac03b260f5dc5b131668e78a0ca Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Fri, 26 Jul 2024 22:20:28 +0200
Subject: [PATCH 53/93] Update ruff to version 0.5.5

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 5e2e0170233..b9998e5bc33 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.4"
+    rev: "v0.5.5"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From f943912288ff091d241bd8097f22d73ba43a45a7 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 31 Jul 2024 23:33:00 +0200
Subject: [PATCH 54/93] revert

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index 305db70c195..8014c881eb2 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -5,7 +5,7 @@ markupsafe==2.0.1
 pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
-setuptools>=71.1.0 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=65.5.1 # not directly required, pinned by Snyk to avoid a vulnerability
 sphinx==4.5.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1

From cded5c2778072252f8eecbf358c59810f9b6e85f Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 31 Jul 2024 23:34:35 +0200
Subject: [PATCH 55/93] Update uv revert torch

---
 packages/grid/backend/backend.dockerfile | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 1270a28badd..a550e110d45 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,6 +1,6 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.30-r0"
-ARG TORCH_VERSION="2.4.0"
+ARG UV_VERSION="0.2.32-r0"
+ARG TORCH_VERSION="2.3.1"
 
 # wolfi-os pkg definition links
 # https://github.com/wolfi-dev/os/blob/main/python-3.12.yaml

From 27b3cf31bc8542606d430dfb9d703b6776decf20 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 31 Jul 2024 23:35:46 +0200
Subject: [PATCH 56/93] Update uvicorn to version 0.30.4

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index 117ecc574a7..5ba2de524df 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
 fastapi==0.111.1
 loguru==0.7.2
-uvicorn[standard]==0.30.3
+uvicorn[standard]==0.30.4

From 33bbdd62873272b49aec66241954b5cce097ef44 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 31 Jul 2024 23:42:10 +0200
Subject: [PATCH 57/93] Update uvicorn, transformers and revert torch

---
 packages/syft/setup.cfg | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 1ac93f71b0a..61b238558d8 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -26,7 +26,7 @@ package_dir =
 # Add here dependencies of your project (semicolon/line-separated), e.g.
 
 syft =
-    setuptools
+    setuptools>=65.5.1
     bcrypt==4.1.2
     boto3==1.34.56
     forbiddenfruit==0.1.4
@@ -45,7 +45,7 @@ syft =
     typeguard==4.1.5
     typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
-    uvicorn[standard]==0.30.3
+    uvicorn[standard]==0.30.4
     markdown==3.5.2
     fastapi==0.111.1
     psutil==6.0.0
@@ -83,12 +83,12 @@ exclude =
 
 [options.extras_require]
 data_science =
-    transformers==4.43.2
+    transformers==4.43.3
     opendp==0.10.0
     evaluate==0.4.2
     recordlinkage==0.16
     # backend.dockerfile installs torch separately, so update the version over there as well!
-    torch==2.4.0
+    torch==2.3.1
 
 dev =
     %(test_plugins)s

From a575b3f0b722856f19fbf247f591577a4b56b486 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 31 Jul 2024 23:43:43 +0200
Subject: [PATCH 58/93] Update  uvicorn to veresion 0.30.4

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index 77ec3f7941c..bd006263418 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
 fastapi==0.111.1
 pyyaml==6.0.1
 supervisor==4.2.5
-uvicorn==0.30.3
+uvicorn==0.30.4

From 4d0fa2858f396bdfc2ef874e13fbe0b2c753f0f7 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 31 Jul 2024 23:51:04 +0200
Subject: [PATCH 59/93] Update seaweedfs.dockerfile

---
 packages/grid/seaweedfs/seaweedfs.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/seaweedfs.dockerfile b/packages/grid/seaweedfs/seaweedfs.dockerfile
index e345a1a5817..c4d9526d51d 100644
--- a/packages/grid/seaweedfs/seaweedfs.dockerfile
+++ b/packages/grid/seaweedfs/seaweedfs.dockerfile
@@ -1,4 +1,4 @@
-ARG SEAWEEDFS_VERSION="3.69"
+ARG SEAWEEDFS_VERSION="3.71"
 FROM chrislusf/seaweedfs:${SEAWEEDFS_VERSION}_large_disk
 
 WORKDIR /root/swfs

From db341b1016b37a31a8fcd8ee12a6a912559c0401 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:08:17 +0200
Subject: [PATCH 60/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index b9998e5bc33..fde492357bb 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.5"
+    rev: "v0.5.6"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From 3a9449c8c53fc7430ea30b1f925d564ed47f5dc1 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:08:56 +0200
Subject: [PATCH 61/93] Update backend.dockerfile

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index a550e110d45..7000f831cd2 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,6 +1,6 @@
 ARG PYTHON_VERSION="3.12"
 ARG UV_VERSION="0.2.32-r0"
-ARG TORCH_VERSION="2.3.1"
+ARG TORCH_VERSION="2.4.0"
 
 # wolfi-os pkg definition links
 # https://github.com/wolfi-dev/os/blob/main/python-3.12.yaml

From 7a0e9860d531deec67e1745f28a066aa948d21be Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:09:23 +0200
Subject: [PATCH 62/93] Update requirements.txt

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index 5ba2de524df..25de92a776a 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
-fastapi==0.111.1
+fastapi==0.112.0
 loguru==0.7.2
 uvicorn[standard]==0.30.4

From 199a8a01e5bd2515c01a22e93cfa27f184c3142c Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:09:53 +0200
Subject: [PATCH 63/93] Update requirements.txt

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index bd006263418..03aef86254f 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
-fastapi==0.111.1
+fastapi==0.112.0
 pyyaml==6.0.1
 supervisor==4.2.5
 uvicorn==0.30.4

From 5d71da258077080c6041b567a156b38f455e82aa Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:11:13 +0200
Subject: [PATCH 64/93] Update requirements.txt

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index 25de92a776a..f9594e9b093 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
 fastapi==0.112.0
 loguru==0.7.2
-uvicorn[standard]==0.30.4
+uvicorn[standard]==0.30.5

From f33d353e4cc1a04a877979095a68e574299a407e Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:11:34 +0200
Subject: [PATCH 65/93] Update requirements.txt

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index 03aef86254f..31eed072e31 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
 fastapi==0.112.0
 pyyaml==6.0.1
 supervisor==4.2.5
-uvicorn==0.30.4
+uvicorn==0.30.5

From db80dcfd8932e5aefaeb5772d58243536c58b2ad Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 5 Aug 2024 18:13:58 +0200
Subject: [PATCH 66/93] Update setup.cfg

---
 packages/syft/setup.cfg | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index e5af3a8814d..2bb7ed4bfd8 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -45,9 +45,9 @@ syft =
     typeguard==4.1.5
     typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
-    uvicorn[standard]==0.30.4
+    uvicorn[standard]==0.30.5
     markdown==3.5.2
-    fastapi==0.111.1
+    fastapi==0.112.0
     psutil==6.0.0
     itables==1.7.1
     argon2-cffi==23.1.0
@@ -94,12 +94,12 @@ dev =
     %(test_plugins)s
     %(telemetry)s
     bandit==1.7.9
-    debugpy==1.8.2
+    debugpy==1.8.3
     importlib-metadata==7.1.0
     isort==5.13.2
     mypy==1.10.1
     pre-commit==3.7.1
-    ruff==0.5.5
+    ruff==0.5.6
     safety>=2.4.0b2
 
 telemetry =

From e08889e381d8eacef044bd3f718587f9bdad527b Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:36:37 +0200
Subject: [PATCH 67/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index cdf30388134..26b6b60e97e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.6"
+    rev: "v0.5.7"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From edf6b12c874523aa75b1f61c7027ea5035597c70 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:37:43 +0200
Subject: [PATCH 68/93] Update requirements.txt

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index f9594e9b093..6e0501e8c2f 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
 fastapi==0.112.0
 loguru==0.7.2
-uvicorn[standard]==0.30.5
+uvicorn[standard]==0.30.6

From f7b7c6813e122305a57cb8841bdb6cda61b0a5e9 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:38:23 +0200
Subject: [PATCH 69/93] Update backend.dockerfile

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 7000f831cd2..0d823b7a1ff 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.32-r0"
+ARG UV_VERSION="0.2.36-r0"
 ARG TORCH_VERSION="2.4.0"
 
 # wolfi-os pkg definition links

From f7bccfeddf6014509208ce894c831f8237358f0a Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:38:48 +0200
Subject: [PATCH 70/93] Update requirements.txt

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index 31eed072e31..4fa4c78859f 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
 fastapi==0.112.0
 pyyaml==6.0.1
 supervisor==4.2.5
-uvicorn==0.30.5
+uvicorn==0.30.6

From db0753370f47e84f7f342d11c9d65eeb3edbe1d7 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:45:03 +0200
Subject: [PATCH 71/93] Update setup.cfg

---
 packages/syft/setup.cfg | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index d51119bdd7c..46823c2c7b3 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -26,7 +26,7 @@ package_dir =
 # Add here dependencies of your project (semicolon/line-separated), e.g.
 
 syft =
-    setuptools>=65.5.1
+    setuptools>=72.2.0
     bcrypt==4.1.2
     boto3==1.34.56
     forbiddenfruit==0.1.4
@@ -41,7 +41,7 @@ syft =
     requests==2.32.3
     RestrictedPython==7.0
     result==0.16.1
-    tqdm==4.66.4
+    tqdm==4.66.5
     typeguard==4.1.5
     typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
@@ -58,8 +58,8 @@ syft =
     pandas==2.2.2
     docker==7.1.0
     kr8s==0.13.5
-    PyYAML==6.0.1
-    azure-storage-blob==12.19.1
+    PyYAML==6.0.2
+    azure-storage-blob==12.22.0
     ipywidgets==8.1.2
     tomli==2.0.1  # Later for python 3.11 > we can just use tomlib that comes with python
     tomli_w==1.0.0
@@ -83,23 +83,23 @@ exclude =
 
 [options.extras_require]
 data_science =
-    transformers==4.43.3
-    opendp==0.10.0
+    transformers==4.44.0
+    opendp==0.11.0
     evaluate==0.4.2
     recordlinkage==0.16
     # backend.dockerfile installs torch separately, so update the version over there as well!
-    torch==2.3.1
+    torch==2.4.0
 
 dev =
     %(test_plugins)s
     %(telemetry)s
     bandit==1.7.9
-    debugpy==1.8.3
-    importlib-metadata==7.1.0
+    debugpy==1.8.5
+    importlib-metadata==8.2.0
     isort==5.13.2
     mypy==1.10.1
-    pre-commit==3.7.1
-    ruff==0.5.6
+    pre-commit==3.8.0
+    ruff==0.5.7
     safety>=2.4.0b2
 
 telemetry =

From fa95d0cbd583f132cf6a451f8cff67e36b144c99 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:45:40 +0200
Subject: [PATCH 72/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 46823c2c7b3..1fdee58c4ee 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -45,7 +45,7 @@ syft =
     typeguard==4.1.5
     typing_extensions==4.12.2
     sherlock[filelock]==0.4.1
-    uvicorn[standard]==0.30.5
+    uvicorn[standard]==0.30.6
     markdown==3.5.2
     fastapi==0.112.0
     psutil==6.0.0

From 9acd4123c6965bab778b6d045fce949dc631e2ec Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 22:59:44 +0200
Subject: [PATCH 73/93] Update requirements.txt

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index 66c439e73b4..d45fe05c0d0 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -6,7 +6,7 @@ markupsafe==2.0.1
 pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
-setuptools>=70.0.0 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=72.2.0 # not directly required, pinned by Snyk to avoid a vulnerability
 sphinx==4.5.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1

From 4a64a289f75c88e51bdb2eaa8e83ebb3da444302 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:02:19 +0200
Subject: [PATCH 74/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 1fdee58c4ee..820e7ba3549 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -30,7 +30,7 @@ syft =
     bcrypt==4.1.2
     boto3==1.34.56
     forbiddenfruit==0.1.4
-    packaging>=23.0
+    packaging>=24.1
     pyarrow==15.0.0
     pycapnp==2.0.0
     pydantic[email]==2.6.0

From 2a1901d7ad8d66946ceae6b291dfc710e55ba345 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:03:20 +0200
Subject: [PATCH 75/93] Update setup.py

---
 packages/syftcli/setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syftcli/setup.py b/packages/syftcli/setup.py
index a8ee36b9a2d..edf7d941af7 100644
--- a/packages/syftcli/setup.py
+++ b/packages/syftcli/setup.py
@@ -13,7 +13,7 @@
 ]
 
 build_packages = [
-    "pyinstaller==6.8.0",
+    "pyinstaller==6.10.0",
 ]
 
 dev_packages = ["pytest"] + build_packages

From b12d3c34d4dfa8556334b96854942bd4b282bed0 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:08:27 +0200
Subject: [PATCH 76/93] Update package.json

---
 packages/grid/frontend/package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/frontend/package.json b/packages/grid/frontend/package.json
index 13a6e1ef837..b5adbfa4b7e 100644
--- a/packages/grid/frontend/package.json
+++ b/packages/grid/frontend/package.json
@@ -44,8 +44,8 @@
     "capnp-ts": "^0.7.0",
     "just-debounce-it": "^3.2.0",
     "ky": "^0.33.3",
-    "libsodium": "0.7.11",
-    "libsodium-wrappers": "0.7.11",
+    "libsodium": "0.7.14",
+    "libsodium-wrappers": "0.7.14",
     "prismjs": "^1.29.0",
     "semver": "^7.5.4",
     "uuid": "^9.0.0"

From 1c22de21ec1836c70516711a0fd47238c6612317 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:16:18 +0200
Subject: [PATCH 77/93] Update package.json

---
 packages/grid/frontend/package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/frontend/package.json b/packages/grid/frontend/package.json
index b5adbfa4b7e..5e5781eb86a 100644
--- a/packages/grid/frontend/package.json
+++ b/packages/grid/frontend/package.json
@@ -44,8 +44,8 @@
     "capnp-ts": "^0.7.0",
     "just-debounce-it": "^3.2.0",
     "ky": "^0.33.3",
-    "libsodium": "0.7.14",
-    "libsodium-wrappers": "0.7.14",
+    "libsodium": "0.7.15",
+    "libsodium-wrappers": "0.7.15",
     "prismjs": "^1.29.0",
     "semver": "^7.5.4",
     "uuid": "^9.0.0"

From 152dcf467e048850b0c2c96c8bb276ffd4eba0a7 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:21:04 +0200
Subject: [PATCH 78/93] Update pnpm-lock.yaml

---
 packages/grid/frontend/pnpm-lock.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/packages/grid/frontend/pnpm-lock.yaml b/packages/grid/frontend/pnpm-lock.yaml
index e85c1b675b4..7cbcad287b9 100644
--- a/packages/grid/frontend/pnpm-lock.yaml
+++ b/packages/grid/frontend/pnpm-lock.yaml
@@ -21,11 +21,11 @@ importers:
         specifier: ^0.33.3
         version: 0.33.3
       libsodium:
-        specifier: 0.7.11
-        version: 0.7.11
+        specifier: 0.7.15
+        version: 0.7.15
       libsodium-wrappers:
-        specifier: 0.7.11
-        version: 0.7.11
+        specifier: 0.7.15
+        version: 0.7.15
       prismjs:
         specifier: ^1.29.0
         version: 1.29.0

From 896876e43812d29d1fc2122a498fc2a015a6de99 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:29:50 +0200
Subject: [PATCH 79/93] Update pnpm-lock.yaml

---
 packages/grid/frontend/pnpm-lock.yaml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/packages/grid/frontend/pnpm-lock.yaml b/packages/grid/frontend/pnpm-lock.yaml
index 7cbcad287b9..e85c1b675b4 100644
--- a/packages/grid/frontend/pnpm-lock.yaml
+++ b/packages/grid/frontend/pnpm-lock.yaml
@@ -21,11 +21,11 @@ importers:
         specifier: ^0.33.3
         version: 0.33.3
       libsodium:
-        specifier: 0.7.15
-        version: 0.7.15
+        specifier: 0.7.11
+        version: 0.7.11
       libsodium-wrappers:
-        specifier: 0.7.15
-        version: 0.7.15
+        specifier: 0.7.11
+        version: 0.7.11
       prismjs:
         specifier: ^1.29.0
         version: 1.29.0

From 81148d7db44d2df90030645e204142cdec504682 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:30:45 +0200
Subject: [PATCH 80/93] Update pnpm-lock.yaml

---
 packages/grid/frontend/pnpm-lock.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/frontend/pnpm-lock.yaml b/packages/grid/frontend/pnpm-lock.yaml
index e85c1b675b4..a384d5cf13d 100644
--- a/packages/grid/frontend/pnpm-lock.yaml
+++ b/packages/grid/frontend/pnpm-lock.yaml
@@ -21,10 +21,10 @@ importers:
         specifier: ^0.33.3
         version: 0.33.3
       libsodium:
-        specifier: 0.7.11
+        specifier: ^0.7.11
         version: 0.7.11
       libsodium-wrappers:
-        specifier: 0.7.11
+        specifier: ^0.7.11
         version: 0.7.11
       prismjs:
         specifier: ^1.29.0

From 790421a3644066232ffe586b3d3d496ec92bffab Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:31:52 +0200
Subject: [PATCH 81/93] Update package.json

---
 packages/grid/frontend/package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/frontend/package.json b/packages/grid/frontend/package.json
index 5e5781eb86a..13a6e1ef837 100644
--- a/packages/grid/frontend/package.json
+++ b/packages/grid/frontend/package.json
@@ -44,8 +44,8 @@
     "capnp-ts": "^0.7.0",
     "just-debounce-it": "^3.2.0",
     "ky": "^0.33.3",
-    "libsodium": "0.7.15",
-    "libsodium-wrappers": "0.7.15",
+    "libsodium": "0.7.11",
+    "libsodium-wrappers": "0.7.11",
     "prismjs": "^1.29.0",
     "semver": "^7.5.4",
     "uuid": "^9.0.0"

From 769453191d7e3219bc3b112d816d23d0aaf18c4d Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 14 Aug 2024 23:35:33 +0200
Subject: [PATCH 82/93] Update pnpm-lock.yaml

---
 packages/grid/frontend/pnpm-lock.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/frontend/pnpm-lock.yaml b/packages/grid/frontend/pnpm-lock.yaml
index a384d5cf13d..e85c1b675b4 100644
--- a/packages/grid/frontend/pnpm-lock.yaml
+++ b/packages/grid/frontend/pnpm-lock.yaml
@@ -21,10 +21,10 @@ importers:
         specifier: ^0.33.3
         version: 0.33.3
       libsodium:
-        specifier: ^0.7.11
+        specifier: 0.7.11
         version: 0.7.11
       libsodium-wrappers:
-        specifier: ^0.7.11
+        specifier: 0.7.11
         version: 0.7.11
       prismjs:
         specifier: ^1.29.0

From 60c9aa49dc4ebd966da73ec5b1395753ad0a7825 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Mon, 19 Aug 2024 01:57:24 +0200
Subject: [PATCH 83/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 26b6b60e97e..ca22813965a 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.5.7"
+    rev: "v0.6.1"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From e481a4c84947b75bdf554f1eba533e29b59d4b7d Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Tue, 27 Aug 2024 23:16:26 +0200
Subject: [PATCH 84/93] Update .pre-commit-config.yaml

---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index ca22813965a..2c1125f3489 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -84,7 +84,7 @@ repos:
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: "v0.6.1"
+    rev: "v0.6.2"
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix, --show-fixes]

From ee485985ab311cfee1a9946256062ff2d318464a Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Tue, 27 Aug 2024 23:17:45 +0200
Subject: [PATCH 85/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index 820e7ba3549..f87b683efff 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -99,7 +99,7 @@ dev =
     isort==5.13.2
     mypy==1.10.1
     pre-commit==3.8.0
-    ruff==0.5.7
+    ruff==0.6.2
     safety>=2.4.0b2
 
 telemetry =

From ef491931f1ceb8c1b41fdc8612dcea5d8607e0ed Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Tue, 27 Aug 2024 23:19:48 +0200
Subject: [PATCH 86/93] Update package.json

---
 packages/grid/frontend/package.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/packages/grid/frontend/package.json b/packages/grid/frontend/package.json
index 13a6e1ef837..b5adbfa4b7e 100644
--- a/packages/grid/frontend/package.json
+++ b/packages/grid/frontend/package.json
@@ -44,8 +44,8 @@
     "capnp-ts": "^0.7.0",
     "just-debounce-it": "^3.2.0",
     "ky": "^0.33.3",
-    "libsodium": "0.7.11",
-    "libsodium-wrappers": "0.7.11",
+    "libsodium": "0.7.14",
+    "libsodium-wrappers": "0.7.14",
     "prismjs": "^1.29.0",
     "semver": "^7.5.4",
     "uuid": "^9.0.0"

From 9c88dbc9cd437ea43ed39abfa0b67597c87863c4 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:45:49 +0200
Subject: [PATCH 87/93] Update setuptools

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index d45fe05c0d0..80235db83a1 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -6,7 +6,7 @@ markupsafe==2.0.1
 pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
-setuptools>=72.2.0 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=74.2.0 # not directly required, pinned by Snyk to avoid a vulnerability
 sphinx==4.5.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1

From 6774046d4d2792cea27996c659b7207ad2efa8ea Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:46:18 +0200
Subject: [PATCH 88/93] Update backend.dockerfile

---
 packages/grid/backend/backend.dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/backend/backend.dockerfile b/packages/grid/backend/backend.dockerfile
index 0d823b7a1ff..42410d1e145 100644
--- a/packages/grid/backend/backend.dockerfile
+++ b/packages/grid/backend/backend.dockerfile
@@ -1,5 +1,5 @@
 ARG PYTHON_VERSION="3.12"
-ARG UV_VERSION="0.2.36-r0"
+ARG UV_VERSION="0.3.5-r0"
 ARG TORCH_VERSION="2.4.0"
 
 # wolfi-os pkg definition links

From 7df920a57efe47f3a0a889cfe10d6bd9ebf591ac Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:47:04 +0200
Subject: [PATCH 89/93] Update requirements.txt

---
 packages/grid/enclave/attestation/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/enclave/attestation/requirements.txt b/packages/grid/enclave/attestation/requirements.txt
index 6e0501e8c2f..f8ccb2de7bd 100644
--- a/packages/grid/enclave/attestation/requirements.txt
+++ b/packages/grid/enclave/attestation/requirements.txt
@@ -1,3 +1,3 @@
-fastapi==0.112.0
+fastapi==0.112.2
 loguru==0.7.2
 uvicorn[standard]==0.30.6

From e3487814786699e60dbd28d400c2088ccd65a705 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:47:38 +0200
Subject: [PATCH 90/93] Update requirements.txt

---
 packages/grid/seaweedfs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/grid/seaweedfs/requirements.txt b/packages/grid/seaweedfs/requirements.txt
index 4fa4c78859f..935bed6d630 100644
--- a/packages/grid/seaweedfs/requirements.txt
+++ b/packages/grid/seaweedfs/requirements.txt
@@ -1,4 +1,4 @@
-fastapi==0.112.0
+fastapi==0.112.2
 pyyaml==6.0.1
 supervisor==4.2.5
 uvicorn==0.30.6

From 1697d3c3ae8d2b209f716b12f3d4a5a1e6106625 Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:48:05 +0200
Subject: [PATCH 91/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index f87b683efff..c91842734dd 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -26,7 +26,7 @@ package_dir =
 # Add here dependencies of your project (semicolon/line-separated), e.g.
 
 syft =
-    setuptools>=72.2.0
+    setuptools>=74.0.0
     bcrypt==4.1.2
     boto3==1.34.56
     forbiddenfruit==0.1.4

From 9af529d01fc38c9110d3320356ed520b6d93846a Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:48:59 +0200
Subject: [PATCH 92/93] Update setup.cfg

---
 packages/syft/setup.cfg | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/packages/syft/setup.cfg b/packages/syft/setup.cfg
index c91842734dd..f55574d232e 100644
--- a/packages/syft/setup.cfg
+++ b/packages/syft/setup.cfg
@@ -47,7 +47,7 @@ syft =
     sherlock[filelock]==0.4.1
     uvicorn[standard]==0.30.6
     markdown==3.5.2
-    fastapi==0.112.0
+    fastapi==0.112.2
     psutil==6.0.0
     itables==1.7.1
     argon2-cffi==23.1.0

From 0d3293795b6fa08691c838cd55db0997b71a080e Mon Sep 17 00:00:00 2001
From: Olivier DEBAUCHE <olivier.debauche@uliege.be>
Date: Wed, 28 Aug 2024 14:50:17 +0200
Subject: [PATCH 93/93] Update requirements.txt

---
 docs/requirements.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/requirements.txt b/docs/requirements.txt
index 80235db83a1..b19249c780f 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -6,7 +6,7 @@ markupsafe==2.0.1
 pydata-sphinx-theme==0.7.2
 pygments>=2.15.0 # not directly required, pinned by Snyk to avoid a vulnerability
 requests>=2.32.3 # not directly required, pinned by Snyk to avoid a vulnerability
-setuptools>=74.2.0 # not directly required, pinned by Snyk to avoid a vulnerability
+setuptools>=74.0.0 # not directly required, pinned by Snyk to avoid a vulnerability
 sphinx==4.5.0
 sphinx-autoapi==1.8.4
 sphinx-code-include==1.1.1