Error while installation

[ichauchcc]

Hi team,

Hope you are all well.

Recently we've been trying to install STRetch into HPC system. But it continues to fail. Please see the error message below.

[dleo2939@login3 ~]$
[dleo2939@login3 ~]$  git clone [email protected]:Oshlack/STRetch.git STRetch
Cloning into 'STRetch'...
Warning: Permanently added the RSA host key for IP address '52.64.108.95' to the list of known hosts.
Permission denied (publickey).
fatal: Could not read from remote repository.

Any suggestion on how we can fix this? Thanks a mil.

CC

[hdashnow]

This looks like a git/GitHub or networking error. You could try cloning via HTTP:
git clone https://github.com/Oshlack/STRetch.git

[hdashnow]

You could comment out the line in the install script that downloads the reference data, then download it manually.
Here's the line in the install script:

STRetch/install.sh

Line 127 in dd35b85

download_hg19

And here's the link to download the reference data manually:
https://home.chpc.utah.edu/~u6026198/hg19.STRling.bundle.tar.gz