Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

build error bella-gpu, issue with large input #34

Open
rwhetten opened this issue Nov 2, 2023 · 0 comments
Open

build error bella-gpu, issue with large input #34

rwhetten opened this issue Nov 2, 2023 · 0 comments

Comments

@rwhetten
Copy link

rwhetten commented Nov 2, 2023

I'm getting the same error as issue #32 with a copy of the repository cloned today, in the same system background as described in issue #32 - Ubuntu 20.04, nvcc 11.6, gcc 9.4. The comment in that issue that LOGAN may have issues with "large-ish" input is a concern, because I'd like to use bella-gpu on a file containing about 600 gigabases of long-read sequences.
Two questions: (1) Is there a fix for the compile failure other than to install different versions of nvcc and gcc?
(2) If I'm successful in compiling, will bella-gpu process 600 gigabases of input?
Thanks!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant