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index-async.js
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let request = require('request');
if (typeof require !== 'undefined') XLSX = require('xlsx');
let striptags = require('striptags');
// Following variables must be setted before running:
//Oauth2 (1)
const token_endpoint = 'https://icdaccessmanagement.who.int/connect/token';
const client_id = '' ; // Your client ID Here
const client_secret = '' ; // Your client secret here
const scope = 'icdapi_access';
const grant_type = 'client_credentials';
let access_token;
//XLS source details (2)
let sourceWorkbook = XLSX.readFile('mini-snomed-list.xls');
let sourceWorkbook2 = XLSX.readFile('mini-snomed-list.xls');
let sourceWorksheet = sourceWorkbook.Sheets['Hoja1'];
let sourceWorksheet2 = sourceWorkbook2.Sheets['Hoja1'];
let searchIndex = 2; //if data matrix starts in row 2
let finalIndex = 6194 + 2; // #ConceptsToSearch + 2
//End
let options = {
url: token_endpoint,
form: {
client_id: client_id,
client_secret: client_secret,
scope: scope,
grant_type: grant_type
}
};
sourceWorksheet['A1'] = sourceWorksheet['A1'] ? sourceWorksheet['A1'] : {};
sourceWorksheet['A1'].t = 's';
sourceWorksheet['A1'].v = 'Concept ID'
sourceWorksheet['B1'] = sourceWorksheet['B1'] ? sourceWorksheet['B1'] : {};
sourceWorksheet['B1'].t = 's';
sourceWorksheet['B1'].v = 'Name'
sourceWorksheet['C1'] = sourceWorksheet['C1'] ? sourceWorksheet['C1'] : {};
sourceWorksheet['C1'].t = 's';
sourceWorksheet['C1'].v = 'Effective Time'
sourceWorksheet['D1'] = sourceWorksheet['D1'] ? sourceWorksheet['D1'] : {};
sourceWorksheet['D1'].t = 's';
sourceWorksheet['D1'].v = 'ICD11 match'
sourceWorksheet['E1'] = sourceWorksheet['E1'] ? sourceWorksheet['E1'] : {};
sourceWorksheet['E1'].t = 's';
sourceWorksheet['E1'].v = 'Score'
let cells_letters = ['F', 'G', 'H', 'I', 'J', 'K', 'L', 'M', 'N', 'O', 'P', 'Q', 'R', 'S', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z', ' '];
let main = function() {
console.log('Search index is : ' + searchIndex);
request.post(options, (error, res, body) => {
if (error) {
console.error(error)
return
}
if (`${res.statusCode}` == 200) {
console.log("Successfully connected to server");
}
console.log(`statusCode: ${res.statusCode}`);
let info = JSON.parse(body)
access_token = info.access_token;
//Options object to request search
searchOptions = {
uri: 'https://id.who.int/icd/entity/search?q={}',
headers: {
'Authorization': 'Bearer ' + access_token,
'Accept': 'application/json',
'Accept-Language': 'en'
}
}
let getRequest = function () {
if (searchIndex == finalIndex) {
return;
} else {
let sourceCell = 'B' + searchIndex;
let resultCell = 'D' + searchIndex;
let scoreCell = 'E' + searchIndex;
const range = {
s: {
c: 0,
r: 0
},
e: {
c: 100,
r: searchIndex + 1
}
};
sourceWorksheet['!ref'] = XLSX.utils.encode_range(range);
sourceWorksheet2['!ref'] = XLSX.utils.encode_range(range);
searchOptions.uri = 'https://id.who.int/icd/entity/search?q={' + sourceWorksheet[sourceCell].v + '}';
sourceWorksheet[resultCell] = sourceWorksheet[resultCell] ? sourceWorksheet[resultCell] : {};
sourceWorksheet[resultCell].t = 's';
sourceWorksheet[scoreCell] = sourceWorksheet[scoreCell] ? sourceWorksheet[scoreCell] : {};
sourceWorksheet[scoreCell].t = 'n';
sourceWorksheet2[resultCell] = sourceWorksheet2[resultCell] ? sourceWorksheet2[resultCell] : {};
sourceWorksheet2[resultCell].t = 's';
sourceWorksheet2[scoreCell] = sourceWorksheet2[scoreCell] ? sourceWorksheet2[scoreCell] : {};
sourceWorksheet2[scoreCell].t = 'n';
request.get(searchOptions, (error, res, body) => {
if (res.statusCode == 401 || res.statusCode == '401') {
main();
} else {
if (error) {
console.error(error);
sourceWorksheet[resultCell].v = 'Bad request';
return;
}
console.log('Cell' + sourceCell + ' request returned ' + `statusCode: ${res.statusCode}`);
let info = JSON.parse(body);
info.DestinationEntities.sort(function (a, b) {
return b.Score - a.Score;
});
if (info.DestinationEntities.length == 0) {
sourceWorksheet[resultCell].v = 'No match';
sourceWorksheet2[resultCell].v = 'No match';
XLSX.writeFile(sourceWorkbook, 'mini-snomed-list-results-small.xls');
XLSX.writeFile(sourceWorkbook2, 'mini-snomed-list-results-large.xls');
} else {
sourceWorksheet[resultCell].v = striptags(info.DestinationEntities[0].Title);
sourceWorksheet2[resultCell].v = striptags(info.DestinationEntities[0].Title);
sourceWorksheet[scoreCell].v = info.DestinationEntities[0].Score;
sourceWorksheet2[scoreCell].v = info.DestinationEntities[0].Score;
XLSX.writeFile(sourceWorkbook, 'mini-snomed-list-results-small.xls');
XLSX.writeFile(sourceWorkbook2, 'mini-snomed-list-results-large.xls');
if (info.DestinationEntities.length > 1) {
let i = 1;
let letter = 0;
while (i < info.DestinationEntities.length && i < 9 && cells_letters[letter] != ' ') {
//extra text cell
sourceWorksheet2[cells_letters[letter] + searchIndex] = sourceWorksheet2[cells_letters[letter] + searchIndex] ? sourceWorksheet2[cells_letters[letter] + searchIndex] : {};
sourceWorksheet2[cells_letters[letter] + searchIndex].t = 's';
sourceWorksheet2[cells_letters[letter] + searchIndex].v = striptags(info.DestinationEntities[i].Title);
letter++;
//extra score cell
sourceWorksheet2[cells_letters[letter] + searchIndex] = sourceWorksheet2[cells_letters[letter] + searchIndex] ? sourceWorksheet2[cells_letters[letter] + searchIndex] : {};
sourceWorksheet2[cells_letters[letter] + searchIndex].t = 'n';
sourceWorksheet2[cells_letters[letter] + searchIndex].v = info.DestinationEntities[i].Score;
letter++;
i++;
}
XLSX.writeFile(sourceWorkbook, 'mini-snomed-list-results-large.xls');
}
}
searchIndex++;
getRequest(searchIndex);
}
});
};
}
getRequest(searchIndex);
});
// return;
}
main();