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Add janis check for evaluating system compatability #41

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illusional opened this issue Aug 4, 2020 · 0 comments
Open

Add janis check for evaluating system compatability #41

illusional opened this issue Aug 4, 2020 · 0 comments

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@illusional
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It would be useful to run some diagnostic to confirm that Janis can run a workflow using the current configuration on a system. There are probably two levels:

Quick diagnostic:

  • Ensure relevant software is loaded:
    • Make sure the container environment is loaded
    • Ensure java is loaded if using Cromwell

Deeper diagnostic:

  • Quick diagnostic
  • End-to-end run of example pipeline
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