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Improving janis-bioinformatics structure #92

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illusional opened this issue Jan 20, 2021 · 0 comments
Open

Improving janis-bioinformatics structure #92

illusional opened this issue Jan 20, 2021 · 0 comments

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@illusional
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The structure of janis-bioinformatics isn't great, here are some suggestions:

  • We grouped tools by their tool provider, but really should've done it by the tool name / base command. Eg:

    • gatk4 tools in a folder called gatk,
    • samtools tools in a folder called samtools,
    • fastqc in a folder called fastqc (not in babrahambioinformatics)

  • Reduce the clutter of base.py + versions.py

  • Move all the workflows into a folder called workflows

This list is to be updated as new information is discussed
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@illusional