Code

extra tools#21

Code

Merged

illusional merged 22 commits intoPMCC-BioinformaticsCore:masterPMCC-BioinformaticsCore/janis-bioinformatics:masterfrom CenterForMedicalGeneticsGhent:masterCopy head branch name to clipboardMar 6, 2020

+1,266-17

Commits

Commits on Feb 26, 2020

• gatk4 versions, add latest version

  matthdsm

  committed
  96236e3

• new gatk4 tool - mergebamalignment

  matthdsm

  committed
  9cf04dd

• syntax fixes

  matthdsm

  committed
  bc79352

• naming error

  matthdsm

  committed
  21ad934

• new tool: GATK4 FastqToSam

  matthdsm

  committed
  396e351

• new tool: GATK4 FastqToSam

  matthdsm

  committed
  144ee19

• Merge branch 'master' of https://github.com/CenterForMedicalGeneticsGhent/janis-bioinformatics

  matthdsm

  committed
  1204cb1

• fix merge error

  matthdsm

  committed
  900b790

Commits on Feb 27, 2020

• new tool: bamsormadup

  matthdsm

  committed
  29722c9

• new tool: io_lib Scramble

  matthdsm

  committed
  69628a3

• import and formatting fixes

  matthdsm

  committed
  14a1c3b

• fix version imports

  matthdsm

  committed
  73e1b36

• fix bamsormadup tool args

  matthdsm

  committed
  a085443

• bamsormadup: fix docker url

  matthdsm

  committed
  20d9fc2

• fix scramble tool args

  matthdsm

  committed
  bf46a70

• Merge branch 'master' of https://github.com/PMCC-BioinformaticsCore/janis-bioinformatics

  matthdsm

  committed
  a463c11

• scramble: fix output type

  matthdsm

  committed
  1f8dbdf

Commits on Mar 5, 2020

• remove bool type from ToolArgument

  matthdsm

  authored
  69273bb

• bump gatk4 version

  matthdsm

  committed
  798190a

• Merge branch 'master' of https://github.com/CenterForMedicalGeneticsGhent/janis-bioinformatics

  matthdsm

  committed
  8f2ff89

• update fastaFai type, usually fai and dict are required together in workflows

  matthdsm

  committed
  be8d880

Commits on Mar 6, 2020

• Revert "update fastaFai type, usually fai and dict are required together in workflows"

  Show description for 8962276
  matthdsm

  committed
  8962276