From 14321a414352714de4f4af8a4301e340091fb890 Mon Sep 17 00:00:00 2001 From: "Bruno P. Kinoshita" Date: Wed, 18 Aug 2021 20:44:43 +1200 Subject: [PATCH 1/3] Add build folders to gitignore --- .gitignore | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index c073c72..5a8e878 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,5 @@ .DS_Store .vscode -.idea/ \ No newline at end of file +.idea/ +janis_pipelines.templates.egg-info/ +pip-wheel-metadata/ From 86a2ce65c032f4944d79831da0bdc9bd9278f53f Mon Sep 17 00:00:00 2001 From: "Bruno P. Kinoshita" Date: Wed, 18 Aug 2021 20:44:51 +1200 Subject: [PATCH 2/3] Fix broken link --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0890c19..eaf1cf8 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ # Janis Templates (assistant) -[Janis-assistant](/PMCC-BioinformaticsCore/janis-assistant) is a component of Janis used to run workflows across various execution environments. This repository contains a number of preconfigured "templates" that you can use to run your workflow. +[Janis-assistant](https://github.com/PMCC-BioinformaticsCore/janis-assistant) is a component of Janis used to run workflows across various execution environments. This repository contains a number of preconfigured "templates" that you can use to run your workflow. A (non-exhaustive) list of examples: From 537bbc928e681c124d74da0fa2ec44acb153e9b7 Mon Sep 17 00:00:00 2001 From: "Bruno P. Kinoshita" Date: Wed, 18 Aug 2021 20:45:26 +1200 Subject: [PATCH 3/3] Remove unused imports --- janis_templates/pawsey.py | 3 --- janis_templates/spartan.py | 3 --- 2 files changed, 6 deletions(-) diff --git a/janis_templates/pawsey.py b/janis_templates/pawsey.py index c181144..009ad83 100644 --- a/janis_templates/pawsey.py +++ b/janis_templates/pawsey.py @@ -1,8 +1,5 @@ -import subprocess from typing import Union, List -from janis_core import Logger - from janis_assistant.templates.slurm import SlurmSingularityTemplate diff --git a/janis_templates/spartan.py b/janis_templates/spartan.py index cd286b0..d75eaaf 100644 --- a/janis_templates/spartan.py +++ b/janis_templates/spartan.py @@ -1,8 +1,5 @@ -import subprocess from typing import Union, List, Optional -from janis_core import Logger - from janis_assistant.templates.slurm import SlurmSingularityTemplate