updated for numpy update

PNNL-CompBio · Jun 20, 2024 · e505d5d · e505d5d
1 parent 269b17f
commit e505d5d
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Showing 5 changed files with 5 additions and 6 deletions.
diff --git a/build/beatAML/requirements.txt b/build/beatAML/requirements.txt
@@ -3,7 +3,7 @@ wget==3.2
 requests
 synapseclient
 argparse
-numpy==1.26.0
+numpy==1.26.4
 openpyxl
 matplotlib
 scikit-learn

diff --git a/build/broad_sanger/requirements.txt b/build/broad_sanger/requirements.txt
@@ -1,6 +1,6 @@
 pandas
 matplotlib
-numpy==1.26.0
+numpy==1.26.4
 argparse
 tqdm
 scikit-learn

diff --git a/build/docker/Dockerfile.mpnst b/build/docker/Dockerfile.mpnst
@@ -12,9 +12,8 @@ WORKDIR /app
 
 ADD build/mpnst/requirements.txt .
 ADD build/mpnst/requirements.r .
-ADD build/mpnst/*.R ./
+ADD build/mpnst/* ./
 ADD build/utils/* ./
-ADD build/mpnst/*sh ./
 
 # installing python libraries
 RUN /opt/venv/bin/pip3 install -r requirements.txt

diff --git a/build/mpnst/build_drugs.sh b/build/mpnst/build_drugs.sh
@@ -1,2 +1,2 @@
 Rscript 02_get_drug_data.R $SYNAPSE_AUTH_TOKEN $1 /tmp/mpnst_drugs.tsv
-/opt/venv/bin/python build_drug_desc.py --drugtable /tmp/mpnst_drugs.tsv --desctable /tmp/mpnst_drug_descriptors.tsv.gz
+/opt/venv/bin/python3 build_drug_desc.py --drugtable /tmp/mpnst_drugs.tsv --desctable /tmp/mpnst_drug_descriptors.tsv.gz
diff --git a/build/mpnst/requirements.txt b/build/mpnst/requirements.txt
@@ -1,7 +1,7 @@
 pyarrow
 pandas
 matplotlib
-numpy==1.26.0
+numpy==1.26.4
 argparse
 tqdm
 scikit-learn