Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Drugs, BeatAML, CanSMILES Updates #252

Merged
merged 21 commits into from
Dec 6, 2024
Merged

Drugs, BeatAML, CanSMILES Updates #252

merged 21 commits into from
Dec 6, 2024

Conversation

jjacobson95
Copy link
Collaborator

@jjacobson95 jjacobson95 commented Nov 22, 2024

This PR will do the following:

  • Drop Problematic Drugs,
  • Switch BeatAML to Synapse download
  • Switch BeatAML to use canSMILES instead of IsoSmiles for improve_sample_id mapping.
  • Drop IsoSMILES from All datasets.

This resolves #241, #248, and #249.

Update:
This also resolves a new bug relating to the GDC tool update (#254) as well as previously missed NCI60 one (#253).

@sgosline I'm going to merge your MPNST PDX branch into this branch, and rebuild with that. Once that runs to completion successfully, we can merge to main.

@jjacobson95 jjacobson95 merged commit f2120e4 into main Dec 6, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: Done
Development

Successfully merging this pull request may close these issues.

remove drugs from CTRP dataset
2 participants