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Could you help understand the plots where the reference path and sample path are the same?
Here's the example of such plot,
This looks to visualize this event. In IGV, I see a small fraction reads evidencing the break but not understanding the AD of "32,31" and how it matches up with the plot.
chr2 95846845 sawfish:0:5054:0:0:0 A A]chr2:113393726] 999 PASS SVTYPE=BND;HOMLEN=23;HOMSEQ=CAAAAGCAGAAATAGACAAATTT;MATEID=sawfish:0:5054:0:0:1 GT:GQ:PL:AD 0/1:999:999,0,999:32,31
In addition, I wonder how the reference blocks B, C, D are determined because those blocks don't seem to play a role in this event.
Thank you!
The text was updated successfully, but these errors were encountered:
Could you help understand the plots where the reference path and sample path are the same?
Here's the example of such plot,
This looks to visualize this event. In IGV, I see a small fraction reads evidencing the break but not understanding the AD of "32,31" and how it matches up with the plot.
In addition, I wonder how the reference blocks B, C, D are determined because those blocks don't seem to play a role in this event.
Thank you!
The text was updated successfully, but these errors were encountered: