From 200efc34b5991bad3df49bf5b5b29bb17f2bd3eb Mon Sep 17 00:00:00 2001
From: William Rowell <wrowell@pacificbiosciences.com>
Date: Thu, 14 Dec 2023 15:27:55 -0800
Subject: [PATCH 1/2] feat: Update TRGT to 0.7.0

---
 README.md                                     | 2 +-
 workflows/sample_analysis/sample_analysis.wdl | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 457449bb..04f73119 100644
--- a/README.md
+++ b/README.md
@@ -270,7 +270,7 @@ The Docker image used by a particular step of the workflow can be identified by
 | samtools | <ul><li>[samtools 1.14](https://github.com/samtools/samtools/releases/tag/1.14)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/samtools) |
 | slivar | <ul><li>[slivar 0.2.2](https://github.com/brentp/slivar/releases/tag/v0.2.2)</li><li>[bcftools 1.14](https://github.com/samtools/bcftools/releases/tag/1.14)</li><li>[vcfpy 0.13.3](https://github.com/bihealth/vcfpy/releases/tag/v0.13.3)</li><li>[pysam 0.19.1](https://github.com/pysam-developers/pysam/releases/tag/v0.19.1)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/3560fcc5a84e044067cea9c9a7669cfc2659178e/docker/slivar) |
 | svpack | <ul><li>[svpack 36180ae6](https://github.com/PacificBiosciences/svpack/tree/a82598ebc4013bf32e70295b83b380ada6302c4a)</li><li>[htslib 1.18](https://github.com/samtools/htslib/releases/tag/1.18)</li><li>[pysam 0.21.0](https://github.com/pysam-developers/pysam/releases/tag/v0.21.0)</li> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/8edbc516abc0ff43ac279b48018003923721b054/docker/svpack) |
-| trgt | <ul><li>[trgt 0.5.0](https://github.com/PacificBiosciences/trgt/releases/tag/v0.5.0)</li><li>[samtools 1.18](https://github.com/samtools/samtools/releases/tag/1.18)</li><li>[bcftools 1.18](https://github.com/samtools/bcftools/releases/tag/1.18)</li><li>[pysam 0.21.0](https://github.com/pysam-developers/pysam/releases/tag/v0.21.0)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/d2a45e0213ac3fa631a51a48757c442d3ed550b6/docker/trgt) |
+| trgt | <ul><li>[trgt 0.7.0](https://github.com/PacificBiosciences/trgt/releases/tag/v0.7.0)</li><li>[samtools 1.18](https://github.com/samtools/samtools/releases/tag/1.18)</li><li>[bcftools 1.18](https://github.com/samtools/bcftools/releases/tag/1.18)</li><li>[pysam 0.21.0](https://github.com/pysam-developers/pysam/releases/tag/v0.21.0)</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/9aae7d50a4beb08a1869dd3ce1a0567ee4e5cbc2/docker/trgt) |
 
 ---
 
diff --git a/workflows/sample_analysis/sample_analysis.wdl b/workflows/sample_analysis/sample_analysis.wdl
index 1f4f1a8d..cea9b8a8 100644
--- a/workflows/sample_analysis/sample_analysis.wdl
+++ b/workflows/sample_analysis/sample_analysis.wdl
@@ -502,7 +502,7 @@ task trgt {
 	}
 
 	runtime {
-		docker: "~{runtime_attributes.container_registry}/trgt@sha256:8c9f236eb3422e79d7843ffd59e1cbd9b76774525f20d88cd68ca64eb63054eb"
+		docker: "~{runtime_attributes.container_registry}/trgt@sha256:07e9d2be1590fc1dd45e6e2a6b9f5869ee6d83f5a1ca47c8ea84e114b70573b6"
 		cpu: threads
 		memory: "4 GB"
 		disk: disk_size + " GB"
@@ -545,7 +545,7 @@ task coverage_dropouts {
 	}
 
 	runtime {
-		docker: "~{runtime_attributes.container_registry}/trgt@sha256:8c9f236eb3422e79d7843ffd59e1cbd9b76774525f20d88cd68ca64eb63054eb"
+		docker: "~{runtime_attributes.container_registry}/trgt@sha256:07e9d2be1590fc1dd45e6e2a6b9f5869ee6d83f5a1ca47c8ea84e114b70573b6"
 		cpu: threads
 		memory: "4 GB"
 		disk: disk_size + " GB"

From 546990c11874312a0075c79bfabd063a12099a1b Mon Sep 17 00:00:00 2001
From: github-actions <41898282+github-actions[bot]@users.noreply.github.com>
Date: Thu, 14 Dec 2023 23:43:55 +0000
Subject: [PATCH 2/2] update wdl-ci config file after successful tests

---
 wdl-ci.config.json | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/wdl-ci.config.json b/wdl-ci.config.json
index 414f0248..454f7884 100644
--- a/wdl-ci.config.json
+++ b/wdl-ci.config.json
@@ -142,7 +142,7 @@
         },
         "trgt": {
           "key": "trgt",
-          "digest": "ylzep5nroxhzjff43gkc6fs25ydor7dd",
+          "digest": "uaowbumdens55465girwarokc46hwgco",
           "tests": [
             {
               "inputs": {
@@ -178,7 +178,7 @@
         },
         "coverage_dropouts": {
           "key": "coverage_dropouts",
-          "digest": "3el45hg36hlyx5cswr3dkvqfg644cvbn",
+          "digest": "3wfgwjflppb5tifrwycmjzy727p7wzyi",
           "tests": [
             {
               "inputs": {