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Changes
Added support for tandem repeat calls from TRGT; minimum supported version - v0.5.0
VCF index files (.tbi) are now automatically generated by HiPhase
The reference FASTA file is now a required parameter for HiPhase; this change prevents sub-optimal performance caused by forgetting to specify the reference genome
HiPhase source code is now released under new LICENSE file
Fixed
Fixed an infinite looping error caused by variants with the same start POS but no overlapping mappings