setup.py

#!/usr/bin/env python
# -*- coding: utf-8 -*-

from setuptools import setup, find_packages

test_deps = [
    'coverage',
    'pbtestdata',
    'pylint',
    'pytest',
    'pytest-cov',
    'pytest-xdist == 1.34.0',
    'sphinx==1.8.5',
    'jinja2==2.11.1',
    'markupsafe==2.0.1',
    'xmlschema',
]

setup(
    name='pbcore',
    version='2.5.1',
    author='Pacific Biosciences',
    author_email='devnet@pacificbiosciences.com',
    description='A Python library for reading and writing PacBio® data files',
    license='BSD-3-Clause-Clear',
    packages=find_packages(),
    include_package_data=True,
    exclude_package_data={'pbcore.data': ['Makefile']},
    zip_safe=False,
    entry_points={'console_scripts': ['.open = pbcore.io.opener:entryPoint']},
    install_requires=[
        'biopython >= 1.76',
        'numpy >= 1.21.0, <= 1.22.4',
        'pysam >= 0.16.0.1',
    ],
    tests_require=test_deps,
    extras_require={'test': test_deps},
    python_requires='>=3.9',
)