diff --git a/LICENSE.txt b/LICENSE.txt new file mode 100644 index 0000000..af8f28f --- /dev/null +++ b/LICENSE.txt @@ -0,0 +1,34 @@ +Copyright (c) 2022, Pacific Biosciences of California, Inc. + +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted (subject to the limitations in the +disclaimer below) provided that the following conditions are met: + + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + + * Redistributions in binary form must reproduce the above + copyright notice, this list of conditions and the following + disclaimer in the documentation and/or other materials provided + with the distribution. + + * Neither the name of Pacific Biosciences nor the names of its + contributors may be used to endorse or promote products derived + from this software without specific prior written permission. + +NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE +GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC +BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED +WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES +OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS +CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, +SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT +LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF +USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND +ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, +OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT +OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF +SUCH DAMAGE. diff --git a/README.md b/README.md new file mode 100644 index 0000000..afcf8a7 --- /dev/null +++ b/README.md @@ -0,0 +1,26 @@ +

pbtk

+

PacBio BAM toolkit

+ +*** + +## Availability + +Latest version can be installed via bioconda package `pbtk`. + +Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda) +for information on Installation, Support, License, Copyright, and Disclaimer. + +## Tools + +This repository is replacing individual tool repositories and binaries from `pbbam`. + + * ccs-kinetics-bystrandify + * extracthifi + * pbindex + * pbindexdump + * pbmerge + * zmwfilter + +## Usage + +TBD