From 0420359b473512e1077c1232727b78c0ba53e7b0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Armin=20To=CC=88pfer?= <atoepfer@pacificbiosciences.com>
Date: Tue, 19 Apr 2022 10:55:45 +0200
Subject: [PATCH] Intial commit

---
 LICENSE.txt | 34 ++++++++++++++++++++++++++++++++++
 README.md   | 26 ++++++++++++++++++++++++++
 2 files changed, 60 insertions(+)
 create mode 100644 LICENSE.txt
 create mode 100644 README.md

diff --git a/LICENSE.txt b/LICENSE.txt
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+Copyright (c) 2022, Pacific Biosciences of California, Inc.
+
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted (subject to the limitations in the
+disclaimer below) provided that the following conditions are met:
+
+ * Redistributions of source code must retain the above copyright
+   notice, this list of conditions and the following disclaimer.
+
+ * Redistributions in binary form must reproduce the above
+   copyright notice, this list of conditions and the following
+   disclaimer in the documentation and/or other materials provided
+   with the distribution.
+
+ * Neither the name of Pacific Biosciences nor the names of its
+   contributors may be used to endorse or promote products derived
+   from this software without specific prior written permission.
+
+NO EXPRESS OR IMPLIED LICENSES TO ANY PARTY'S PATENT RIGHTS ARE
+GRANTED BY THIS LICENSE. THIS SOFTWARE IS PROVIDED BY PACIFIC
+BIOSCIENCES AND ITS CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED
+WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
+OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL PACIFIC BIOSCIENCES OR ITS
+CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
+USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
+OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGE.
diff --git a/README.md b/README.md
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+<h1 align="center">pbtk</h1>
+<p align="center">PacBio BAM toolkit</p>
+
+***
+
+## Availability
+
+Latest version can be installed via bioconda package `pbtk`.
+
+Please refer to our [official pbbioconda page](https://github.com/PacificBiosciences/pbbioconda)
+for information on Installation, Support, License, Copyright, and Disclaimer.
+
+## Tools
+
+This repository is replacing individual tool repositories and binaries from `pbbam`.
+
+ *  ccs-kinetics-bystrandify
+ *  extracthifi
+ *  pbindex
+ *  pbindexdump
+ *  pbmerge
+ *  zmwfilter
+
+## Usage
+
+TBD