ci-pharmcat.yml

name: PharmCAT CI

on:
  workflow_dispatch:
    branches:
      - '*'
  push:
    branches:
      - '*'
    paths:
      - '.github/workflows/ci-pharmcat.yml'
      - 'src/main/**'
      - 'src/test/**'
      - 'build.gradle'

# cancel current build on push from the same PR, branch or tag (https://stackoverflow.com/a/72408109/1063501)
concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  build:
    name: Build project
    runs-on: ubuntu-latest

    steps:
      - name: Checkout code
        uses: actions/checkout@v3

      - name: Set up JDK
        uses: actions/setup-java@v3
        with:
          distribution: 'temurin'
          java-version: |
            17
            21
          cache: 'gradle'

      - name: Run PharmCAT tests
        run: ./gradlew test --no-daemon

      - name: Run PharmCAT tests on Java 21
        run: ./gradlew testOnJava21 --no-daemon

      - name: Codecov
        uses: codecov/codecov-action@v3
        with:
          files: ./build/reports/jacoco/test/jacocoTestReport.xml
          flags: unittests

      - name: Send Slack notification on failure
        if: failure()
        env:
          SLACK_BOT_TOKEN: ${{ secrets.SLACK_NOTIFICATIONS_BOT_TOKEN }}
        uses: voxmedia/github-action-slack-notify-build@v1
        with:
          channel: dev
          status: FAILED
          color: danger