From b7e66ea45b9f1cd64c8f4834144db4628ce2bd84 Mon Sep 17 00:00:00 2001 From: semantic-release-bot Date: Tue, 6 Aug 2024 15:32:44 -0700 Subject: [PATCH] chore(release): 2.15.0 ## [2.15.0](https://github.com/PharmGKB/PharmCAT/compare/v2.14.0...v2.15.0) (2024-08-06) ### Features * **json2tsv:** report error when no allele definition json can be found ([03a8b1f](https://github.com/PharmGKB/PharmCAT/commit/03a8b1f63b2e42595b8cdefd7704848bb332c4f9)) * **phenotyper:** generate diplotype data ([ed4d03f](https://github.com/PharmGKB/PharmCAT/commit/ed4d03f57455e41023c23fc7ef9032fcdd2d381e)) ### Bug Fixes * fix haplotype name sorting ([f9888b0](https://github.com/PharmGKB/PharmCAT/commit/f9888b0efeb15b74956f3cc7656a8bdf7e2343a5)) * improve Subsetter ([971ba16](https://github.com/PharmGKB/PharmCAT/commit/971ba16b084b6e868c37df4e73412214e5492150)) * reduce data size ([5bdcc49](https://github.com/PharmGKB/PharmCAT/commit/5bdcc4907614f740c538185dea78f95407d19a21)) * **data:** update data ([a57b955](https://github.com/PharmGKB/PharmCAT/commit/a57b955b3f42e0786154093a437e74393f89b4c0)) * **json2tsv:** allow the script to find the allele definition jsons from wherever it is run ([03151ba](https://github.com/PharmGKB/PharmCAT/commit/03151ba667e4c8f3ef2e979466d0f2722a840972)) * **namedallelematcher:** avoid exceptions ([f4fe35a](https://github.com/PharmGKB/PharmCAT/commit/f4fe35ae5647af6b52c87aa4028e1d3c42f40cd6)) * **namedallelematcher:** fix handling of phased DPYD HapB3 alleles ([286b76d](https://github.com/PharmGKB/PharmCAT/commit/286b76d5c45b417d595593c317c1817b231742ee)) * **namedallelematcher:** make NamedAllele.structuralVariant a private property ([df68105](https://github.com/PharmGKB/PharmCAT/commit/df681056863284552f4408d678d0afc286de38f1)) * **namedallelematcher:** make sure cached properties are updated correctly ([ab1e194](https://github.com/PharmGKB/PharmCAT/commit/ab1e194bece9dedfde3c12e8abb15a292d7a83d5)) * **phenotyper:** fix typo in CYP2D6 activity value assignment and drug count ([36cc688](https://github.com/PharmGKB/PharmCAT/commit/36cc6882d00f1d0054c91815ab1f23f12bb30285)) * **phenotyper:** fix typo in two specific CYP2D6 diplotype activity score assignment ([cae0f8c](https://github.com/PharmGKB/PharmCAT/commit/cae0f8c6da998b0abc5ca2fc78aa7fa69767d600)) * **phenotyper:** use correct comparator ([4cf8cb2](https://github.com/PharmGKB/PharmCAT/commit/4cf8cb2540e1be2059f58646304f2b101e6ff8e3)) * **preprocessor:** resolve errors caused by similar sample names ([905b2c3](https://github.com/PharmGKB/PharmCAT/commit/905b2c38fca45643cc8bbf24adbf6b489de5cefe)) * **subsetter:** fix how numeric cells are handled in Excel ([bbaa135](https://github.com/PharmGKB/PharmCAT/commit/bbaa1356497c3bcb56ad874251b720a841f234ab)) --- CHANGELOG.md | 26 ++++++++++++++++++++++++++ docs/index.md | 2 +- package.json | 2 +- preprocessor/preprocessor/common.py | 2 +- 4 files changed, 29 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 799382cc..77988fde 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,29 @@ +## [2.15.0](https://github.com/PharmGKB/PharmCAT/compare/v2.14.0...v2.15.0) (2024-08-06) + + +### Features + +* **json2tsv:** report error when no allele definition json can be found ([03a8b1f](https://github.com/PharmGKB/PharmCAT/commit/03a8b1f63b2e42595b8cdefd7704848bb332c4f9)) +* **phenotyper:** generate diplotype data ([ed4d03f](https://github.com/PharmGKB/PharmCAT/commit/ed4d03f57455e41023c23fc7ef9032fcdd2d381e)) + + +### Bug Fixes + +* fix haplotype name sorting ([f9888b0](https://github.com/PharmGKB/PharmCAT/commit/f9888b0efeb15b74956f3cc7656a8bdf7e2343a5)) +* improve Subsetter ([971ba16](https://github.com/PharmGKB/PharmCAT/commit/971ba16b084b6e868c37df4e73412214e5492150)) +* reduce data size ([5bdcc49](https://github.com/PharmGKB/PharmCAT/commit/5bdcc4907614f740c538185dea78f95407d19a21)) +* **data:** update data ([a57b955](https://github.com/PharmGKB/PharmCAT/commit/a57b955b3f42e0786154093a437e74393f89b4c0)) +* **json2tsv:** allow the script to find the allele definition jsons from wherever it is run ([03151ba](https://github.com/PharmGKB/PharmCAT/commit/03151ba667e4c8f3ef2e979466d0f2722a840972)) +* **namedallelematcher:** avoid exceptions ([f4fe35a](https://github.com/PharmGKB/PharmCAT/commit/f4fe35ae5647af6b52c87aa4028e1d3c42f40cd6)) +* **namedallelematcher:** fix handling of phased DPYD HapB3 alleles ([286b76d](https://github.com/PharmGKB/PharmCAT/commit/286b76d5c45b417d595593c317c1817b231742ee)) +* **namedallelematcher:** make NamedAllele.structuralVariant a private property ([df68105](https://github.com/PharmGKB/PharmCAT/commit/df681056863284552f4408d678d0afc286de38f1)) +* **namedallelematcher:** make sure cached properties are updated correctly ([ab1e194](https://github.com/PharmGKB/PharmCAT/commit/ab1e194bece9dedfde3c12e8abb15a292d7a83d5)) +* **phenotyper:** fix typo in CYP2D6 activity value assignment and drug count ([36cc688](https://github.com/PharmGKB/PharmCAT/commit/36cc6882d00f1d0054c91815ab1f23f12bb30285)) +* **phenotyper:** fix typo in two specific CYP2D6 diplotype activity score assignment ([cae0f8c](https://github.com/PharmGKB/PharmCAT/commit/cae0f8c6da998b0abc5ca2fc78aa7fa69767d600)) +* **phenotyper:** use correct comparator ([4cf8cb2](https://github.com/PharmGKB/PharmCAT/commit/4cf8cb2540e1be2059f58646304f2b101e6ff8e3)) +* **preprocessor:** resolve errors caused by similar sample names ([905b2c3](https://github.com/PharmGKB/PharmCAT/commit/905b2c38fca45643cc8bbf24adbf6b489de5cefe)) +* **subsetter:** fix how numeric cells are handled in Excel ([bbaa135](https://github.com/PharmGKB/PharmCAT/commit/bbaa1356497c3bcb56ad874251b720a841f234ab)) + ## [2.14.0](https://github.com/PharmGKB/PharmCAT/compare/v2.13.0...v2.14.0) (2024-07-19) diff --git a/docs/index.md b/docs/index.md index c8014bd1..d4076236 100644 --- a/docs/index.md +++ b/docs/index.md @@ -3,7 +3,7 @@ title: Home permalink: / nav_order: 1 # version is dynamically updated - DO NOT MODIFY MANUALLY -pharmcat_version: 2.14.0 +pharmcat_version: 2.15.0 --- # PharmCAT:
Pharmacogenomics Clinical Annotation Tool diff --git a/package.json b/package.json index 318c6c36..72e3c418 100644 --- a/package.json +++ b/package.json @@ -1,6 +1,6 @@ { "name": "pharmcat", - "version": "2.14.0", + "version": "2.15.0", "repository": { "type": "git", "url": "https://github.com/PharmGKB/PharmCAT.git" diff --git a/preprocessor/preprocessor/common.py b/preprocessor/preprocessor/common.py index a0b3eb34..50fa0e99 100644 --- a/preprocessor/preprocessor/common.py +++ b/preprocessor/preprocessor/common.py @@ -2,7 +2,7 @@ # version is dynamically updated - DO NOT MODIFY MANUALLY -PHARMCAT_VERSION = '2.14.0' +PHARMCAT_VERSION = '2.15.0' # expected tool versions MIN_BCFTOOLS_VERSION = '1.18'