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PhilAppleby / rsfind_bgen Public

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rsfind_bgen

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find_bgen_rs.py

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11 lines (8 loc) · 303 Bytes

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rsfind_bgen

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find_bgen_rs.py

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11 lines (8 loc) · 303 Bytes

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import numpy as np

import ctypes

rsfind = ctypes.cdll.LoadLibrary("./rsfind.so")

genoFilePath = "/homes/pappleby/data/ukb/geno/chr22.bgen"

dbFilePath = "/homes/pappleby/data/ukb/geno/chr22.bgen.bgi"

rsid = "rs143816252"

rtn = rsfind.init_rsid_search(genoFilePath, dbFilePath, rsid);

print "RTN", rtn

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