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Added text/html as content mime type for the report file #155

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merged 1 commit into from
Oct 10, 2024
Merged

Added text/html as content mime type for the report file #155

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1 change: 1 addition & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
2. Updated nf-core/template to 3.0.1 [#149](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/149)
3. Updated `samtools faidx` to 1.21
4. Now using nf-test for pipeline level testing [#153](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/153)
5. Added `text/html` as content mime type for the report file [#146](https://github.com/Plant-Food-Research-Open/assemblyqc/issues/146)

### `Fixed`

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15 changes: 12 additions & 3 deletions conf/modules.config
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Expand Up @@ -387,9 +387,18 @@ process {

withName: '.*:ASSEMBLYQC:CREATEREPORT' {
publishDir = [
path: { "$params.outdir" },
mode: params.publish_dir_mode,
saveAs: { filename -> filename.equals("versions.yml") ? null : filename }
[
path: { "$params.outdir" },
mode: params.publish_dir_mode,
pattern: 'report.json',
contentType: 'application/json'
],
[
path: { "$params.outdir" },
mode: params.publish_dir_mode,
pattern: 'report.html',
contentType: 'text/html'
]
]
}
}
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