Merge branch 'brainpy:master' into master

.github/workflows/CI-models.yml

@@ -32,6 +32,7 @@ jobs:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies
         run: |
+          python -m pip install --upgrade pip
           if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
           pip uninstall brainpy -y
           python setup.py install
@@ -79,6 +80,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
+        python -m pip install --upgrade pip
         if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
         pip uninstall brainpy -y
         python setup.py install
@@ -127,6 +129,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
+        python -m pip install --upgrade pip
         python -m pip install numpy>=1.21.0
         python -m pip install -r requirements-dev.txt
         python -m pip install tqdm brainpylib

.github/workflows/CI.yml

@@ -11,11 +11,15 @@ on:
     branches:
       - '**'        # matches every branch
 
-#on:
-#  push:
-#    branches: [ master ]
-#  pull_request:
-#    branches: [ master ]
+
+permissions:
+  contents: read  # to fetch code
+  actions: write  # to cancel previous workflows
+
+# This is what will cancel the workflow
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
 
 jobs:
@@ -24,196 +28,89 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: [ "3.9", "3.10", "3.11"]
+        python-version: [ "3.9", "3.10", "3.11" ]
 
     steps:
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
       - uses: actions/checkout@v4
+      - name: Print concurrency group
+        run: echo '${{ github.workflow }}-${{ github.ref }}'
       - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip
-          python -m pip install flake8 pytest
           if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
           pip uninstall brainpy -y
           python setup.py install
-      - name: Lint with flake8
-        run: |
-          # stop the build if there are Python syntax errors or undefined names
-          flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
-          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-          flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
       - name: Test with pytest
         run: |
           cd brainpy
           pytest _src/
 
 
-#  test_linux_py37:
-#    runs-on: ubuntu-latest
-#    strategy:
-#      fail-fast: false
-#      matrix:
-#        python-version: ["3.7"]
-#
-#    steps:
-#    - uses: actions/checkout@v4
-#    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v5
-#      with:
-#        python-version: ${{ matrix.python-version }}
-#    - name: Install dependencies
-#      run: |
-#        python -m pip install --upgrade pip
-#        python -m pip install flake8 pytest
-#        if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
-#        pip install jax==0.3.25
-#        pip install jaxlib==0.3.25
-#        pip uninstall brainpy -y
-#        python setup.py install
-#    - name: Lint with flake8
-#      run: |
-#        # stop the build if there are Python syntax errors or undefined names
-#        flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
-#        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-#        flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-#    - name: Test with pytest
-#      run: |
-#        cd examples
-#        pytest ../brainpy/
-#
-
   test_macos:
     runs-on: macos-latest
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.9", "3.10", "3.11"]
+        python-version: [ "3.9", "3.10", "3.11" ]
 
     steps:
-    - uses: actions/checkout@v4
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v5
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install flake8 pytest
-        if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
-        pip uninstall brainpy -y
-        python setup.py install
-    - name: Lint with flake8
-      run: |
-        # stop the build if there are Python syntax errors or undefined names
-        flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
-        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-        flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-    - name: Test with pytest
-      run: |
-        cd brainpy
-        pytest _src/
-
-#  test_macos_py37:
-#    runs-on: macos-latest
-#    strategy:
-#      fail-fast: false
-#      matrix:
-#        python-version: [ "3.7" ]
-#
-#    steps:
-#      - uses: actions/checkout@v4
-#      - name: Set up Python ${{ matrix.python-version }}
-#        uses: actions/setup-python@v5
-#        with:
-#          python-version: ${{ matrix.python-version }}
-#      - name: Install dependencies
-#        run: |
-#          python -m pip install --upgrade pip
-#          python -m pip install flake8 pytest
-#          if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
-#          pip install jax==0.3.25
-#          pip install jaxlib==0.3.25
-#          pip uninstall brainpy -y
-#          python setup.py install
-#      - name: Lint with flake8
-#        run: |
-#          # stop the build if there are Python syntax errors or undefined names
-#          flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
-#          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-#          flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-#      - name: Test with pytest
-#        run: |
-#          cd examples
-#          pytest ../brainpy/
-#
-
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v4
+      - name: Print concurrency group
+        run: echo '${{ github.workflow }}-${{ github.ref }}'
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
+          pip uninstall brainpy -y
+          python setup.py install
+      - name: Test with pytest
+        run: |
+          cd brainpy
+          pytest _src/
 
-#  test_windows:
-#    runs-on: windows-latest
-#    strategy:
-#      fail-fast: false
-#      matrix:
-#        python-version: ["3.9", "3.10", "3.11"]
-#
-#    steps:
-#    - uses: actions/checkout@v4
-#    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v5
-#      with:
-#        python-version: ${{ matrix.python-version }}
-#    - name: Install dependencies
-#      run: |
-#        python -m pip install --upgrade pip
-#        python -m pip install flake8 pytest
-#        python -m pip install -r requirements-dev.txt
-#        pip uninstall brainpy -y
-#        python setup.py install
-#    - name: Lint with flake8
-#      run: |
-#        # stop the build if there are Python syntax errors or undefined names
-#        flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
-#        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-#        flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-#    - name: Test with pytest
-#      run: |
-#        cd brainpy
-#        pytest _src/
 
+  test_windows:
+    runs-on: windows-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [ "3.9", "3.10", "3.11" ]
 
-#  test_windows_py37:
-#    runs-on: windows-latest
-#    strategy:
-#      fail-fast: false
-#      matrix:
-#        python-version: ["3.7"]
-#
-#    steps:
-#    - uses: actions/checkout@v4
-#    - name: Set up Python ${{ matrix.python-version }}
-#      uses: actions/setup-python@v5
-#      with:
-#        python-version: ${{ matrix.python-version }}
-#    - name: Install dependencies
-#      run: |
-#        python -m pip install --upgrade pip
-#        python -m pip install flake8 pytest
-#        python -m pip install numpy>=1.21.0
-#        python -m pip install "jaxlib==0.3.25" -f https://whls.blob.core.windows.net/unstable/index.html --use-deprecated legacy-resolver
-#        python -m pip install https://github.com/google/jax/archive/refs/tags/jax-v0.3.25.tar.gz
-#        python -m pip install -r requirements-dev.txt
-#        python -m pip install tqdm brainpylib
-#        pip uninstall brainpy -y
-#        python setup.py install
-#    - name: Lint with flake8
-#      run: |
-#        # stop the build if there are Python syntax errors or undefined names
-#        flake8 brainpy/ --count --select=E9,F63,F7,F82 --show-source --statistics
-#        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
-#        flake8 brainpy/ --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
-#    - name: Test with pytest
-#      run: |
-#        cd examples
-#        pytest ../brainpy/
+    steps:
+      - name: Cancel Previous Runs
+        uses: styfle/[email protected]
+        with:
+          access_token: ${{ github.token }}
+      - uses: actions/checkout@v4
+      - name: Print concurrency group
+        run: echo '${{ github.workflow }}-${{ github.ref }}'
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -r requirements-dev.txt
+          pip uninstall brainpy -y
+          python setup.py install
+      - name: Test with pytest
+        run: |
+          cd brainpy
+          pytest _src/ -p no:faulthandler

README.md

@@ -25,29 +25,7 @@ BrainPy is a flexible, efficient, and extensible framework for computational neu
 
 ## Installation
 
-BrainPy is based on Python (>=3.8) and can be installed on Linux (Ubuntu 16.04 or later), macOS (10.12 or later), and Windows platforms. Install the latest version of BrainPy:
-
-```bash
-$ pip install brainpy -U
-```
-
-In addition, many customized operators in BrainPy are implemented in ``brainpylib``.
-Install the latest version of `brainpylib` by:
-
-```bash
-# CPU installation for Linux, macOS and Windows
-$ pip install --upgrade brainpylib
-```
-
-```bash
-# CUDA 12 installation for Linux only
-$ pip install --upgrade brainpylib-cu12x
-```
-
-```bash
-# CUDA 11 installation for Linux only
-$ pip install --upgrade brainpylib-cu11x
-```
+BrainPy is based on Python (>=3.8) and can be installed on Linux (Ubuntu 16.04 or later), macOS (10.12 or later), and Windows platforms. 
 
 For detailed installation instructions, please refer to the documentation: [Quickstart/Installation](https://brainpy.readthedocs.io/en/latest/quickstart/installation.html)