Merge pull request #24 from hasindu2008/main

cut off params update
Psy-Fer · Oct 18, 2023 · f5f8c86 · f5f8c86
2 parents 7e3c8cf + f6cc525
commit f5f8c86
Showing 1 changed file with 20 additions and 9 deletions.
diff --git a/docs/param.md b/docs/param.md
@@ -1,10 +1,21 @@
-The mysterious default parameters in Guppy.
-
-- Guppy 4.0.11 [dna_r9.4.1_450bps_hac_prom] (qscore cut off default:7)
-- Guppy 6.4.2 [dna_r9.4.1_450bps_fast_prom] (qscore cut off - default:8)
-- Guppy 6.4.2 [dna_r9.4.1_450bps_hac_prom] (qscore cut off - default:9)
-- Guppy 6.4.2 [dna_r9.4.1_450bps_sup_prom] (qscore cut off - default:10)
-- Guppy 6.4.2 [dna_r10.4.1_e8.2_400bps_fast_prom] (qscore cut off - default 8) 
-- Guppy 6.4.2 [dna_r10.4.1_e8.2_400bps_hac_prom] (qscore cut off - default 9)
-- Guppy 6.4.2 [dna_r10.4.1_e8.2_400bps_sup] (qscore cut off - default 10)
+# The mysterious default parameters in Guppy
+
+##  qscore cutoff 
+
+The qscore cutoff (that determine pass/fail) in Guppy keeps on changing and there is no easy way to get this. So this is an attempt to document based on what we find.
+
+
+| Guppy version | Model                         | default qscore cut off |
+|--------       |------                         | ---                    | 
+| 6.5.7         | dna_r10.4.1_e8.2_400bps_5khz_hac_prom   |      9                   |
+|               |                               |                      | 
+| 6.4.2         | dna_r9.4.1_450bps_fast_prom   |    8                   |
+| 6.4.2         | dna_r9.4.1_450bps_hac_prom    |    9                   |
+| 6.4.2         | dna_r9.4.1_450bps_sup_prom    |    10                  |
+| 6.4.2         | dna_r10.4.1_e8.2_400bps_fast_prom   |      8                   |
+| 6.4.2         | dna_r10.4.1_e8.2_400bps_hac_prom   |      9                   |
+| 6.4.2         | dna_r10.4.1_e8.2_400bps_sup   |      10                  |
+|               |                               |                      | 
+| 4.0.11        | dna_r9.4.1_450bps_hac_prom    | 7                      |
+