get header from sam stream

Psy-Fer · Nov 5, 2024 · fd72796 · fd72796
1 parent b60e203
commit fd72796
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/scripts/u2t.py b/scripts/u2t.py
@@ -211,6 +211,8 @@ def main():
                     print(l)
         elif args.format == "sam":
             reads = stream_sam()
+            # get the header, as first output from generator
+            header = next(reads)
             #write header
             for l in header:
                 print(l)