ci.yml

name: CI
on: [push]

# Automatically stop old builds on the same branch/PR
concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

defaults:
  run:
    shell: bash -el {0}

jobs:
  pre-commit-checks:
    name: Pre-commit Checks
    timeout-minutes: 30
    runs-on: ubuntu-latest
    steps:
      - name: Checkout branch
        uses: actions/checkout@v4
      - name: Set up pixi
        uses: prefix-dev/setup-pixi@v0.8.1
        with:
          environments: default lint
      - name: pre-commit
        run: pixi run pre-commit-run --color=always --show-diff-on-failure

  mypy-example-nbs:
    name: Check notebooks mypy
    timeout-minutes: 5
    runs-on: ubuntu-latest
    steps:
      - name: Set up pixi
        uses: prefix-dev/setup-pixi@v0.8.1
      - name: Run mypy
        run: |
          jupyter nbconvert --to script docs/examples/*.ipynb
          for file in docs/examples/*.txt; do mv -- "$file" "${file%.txt}.py"; done
          mypy docs/examples/*.py

  unit-tests:
    name: Unit Tests
    timeout-minutes: 30
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest]
        env: ["py310", "py311", "py312"]
    steps:
      - name: Checkout branch
        uses: actions/checkout@v4
      - name: Set up pixi
        uses: prefix-dev/setup-pixi@v0.8.1
        with:
          environments: ${{ matrix.env }}
      - name: Install repository
        run: |
          pixi run -e ${{ matrix.env }} postinstall
          pixi run -e ${{ matrix.env }} coverage
      - name: Generate code coverage report
        if: matrix.python-version == '3.12'
        uses: codecov/codecov-action@v3.1.3
        with:
          file: ./coverage.xml
      - name: Upload coverage reports to Codecov
        if: matrix.env == 'py312'
        uses: codecov/codecov-action@v3.1.3
        env:
          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
          file: ./coverage.xml