From ed6ddd960a6fd5c7bc8530ff3039c7653330ed8b Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 12 Apr 2024 01:43:00 +0000 Subject: [PATCH] Bump idna from 3.4 to 3.7 Bumps [idna](https://github.com/kjd/idna) from 3.4 to 3.7. - [Release notes](https://github.com/kjd/idna/releases) - [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst) - [Commits](https://github.com/kjd/idna/compare/v3.4...v3.7) --- updated-dependencies: - dependency-name: idna dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 84 +++++++---------------------------------------------- 1 file changed, 10 insertions(+), 74 deletions(-) diff --git a/poetry.lock b/poetry.lock index 6b8513320..fa7989ac8 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "argcomplete" version = "3.0.8" description = "Bash tab completion for argparse" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -19,7 +18,6 @@ test = ["coverage", "mypy", "pexpect", "ruff", "wheel"] name = "argh" version = "0.28.1" description = "An unobtrusive argparse wrapper with natural syntax" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -37,7 +35,6 @@ test = ["iocapture (>=0.1.2)", "pytest (>=7.2)", "pytest-cov (>=4.0)", "tox (>=4 name = "attrs" version = "21.4.0" description = "Classes Without Boilerplate" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -55,7 +52,6 @@ tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy" name = "beautifulsoup4" version = "4.12.2" description = "Screen-scraping library" -category = "main" optional = false python-versions = ">=3.6.0" files = [ @@ -74,7 +70,6 @@ lxml = ["lxml"] name = "biopython" version = "1.81" description = "Freely available tools for computational molecular biology." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -86,6 +81,10 @@ files = [ {file = "biopython-1.81-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:a51d9c1d1b4b634447535da74a644fae59bc234fbbf9001e2dc6b6fbabb98019"}, {file = "biopython-1.81-cp311-cp311-win32.whl", hash = "sha256:2f9cfaf16d55ab80d514e7aebe5710dabe4e4ff47ede851031202e33b3249da3"}, {file = "biopython-1.81-cp311-cp311-win_amd64.whl", hash = "sha256:e41b55edcfd448630e77bf4de66a7235324a8a149621499891da6bd1d5085b9a"}, + {file = "biopython-1.81-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:175fcddc9f22a070aa6db54755d60c4b31090cc39f5f5f4b0a9a5d1ae3b45cd7"}, + {file = "biopython-1.81-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:9ec149487f3d1e0cf2b52b6071641c161ed545b0855ff51a71506152e14fc5bb"}, + {file = "biopython-1.81-cp312-cp312-win32.whl", hash = "sha256:daeab15274bbcc0455cbd378636e14f53bc7c5b1f383e77021d7222e72cc3418"}, + {file = "biopython-1.81-cp312-cp312-win_amd64.whl", hash = "sha256:22f5741aca91af0a76c0d5617e58e554fd3374bbd16e0c0ac1facf45b107313b"}, {file = "biopython-1.81-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:3b36ba1bf6395c09a365c53530c9d71f3617763fa2c1d452b3d8948368c0f1de"}, {file = "biopython-1.81-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7c5c07123ff5f44c9e6b5369df854a38afd3c0c50ef58498a0ae8f7eb799f3e8"}, {file = "biopython-1.81-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:97cbdbed01b2512471f36c74b91658d1dfbdcbf39bc038f6ce5a41c3e60a8fc6"}, @@ -111,7 +110,6 @@ numpy = "*" name = "certifi" version = "2022.12.7" description = "Python package for providing Mozilla's CA Bundle." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -123,7 +121,6 @@ files = [ name = "charset-normalizer" version = "3.1.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "main" optional = false python-versions = ">=3.7.0" files = [ @@ -208,7 +205,6 @@ files = [ name = "click" version = "8.1.3" description = "Composable command line interface toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -223,7 +219,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "click-aliases" version = "1.0.1" description = "Enable aliases for Click" -category = "main" optional = false python-versions = "*" files = [ @@ -241,7 +236,6 @@ dev = ["coveralls", "flake8", "flake8-import-order", "pytest", "pytest-cov", "to name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -253,7 +247,6 @@ files = [ name = "cython" version = "0.29.34" description = "The Cython compiler for writing C extensions for the Python language." -category = "main" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -303,7 +296,6 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "main" optional = false python-versions = ">=3.5" files = [ @@ -315,7 +307,6 @@ files = [ name = "et-xmlfile" version = "1.1.0" description = "An implementation of lxml.xmlfile for the standard library" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -327,7 +318,6 @@ files = [ name = "furl" version = "2.1.3" description = "URL manipulation made simple." -category = "main" optional = false python-versions = "*" files = [ @@ -343,7 +333,6 @@ six = ">=1.8.0" name = "gffutils" version = "0.11.1" description = "Work with GFF and GTF files in a flexible database framework" -category = "main" optional = false python-versions = "*" files = [ @@ -361,7 +350,6 @@ six = ">=1.12.0" name = "humanfriendly" version = "10.0" description = "Human friendly output for text interfaces using Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -374,21 +362,19 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve [[package]] name = "idna" -version = "3.4" +version = "3.7" description = "Internationalized Domain Names in Applications (IDNA)" -category = "main" optional = false python-versions = ">=3.5" files = [ - {file = "idna-3.4-py3-none-any.whl", hash = "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"}, - {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"}, + {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"}, + {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"}, ] [[package]] name = "ijson" version = "3.2.0.post0" description = "Iterative JSON parser with standard Python iterator interfaces" -category = "main" optional = false python-versions = "*" files = [ @@ -476,7 +462,6 @@ files = [ name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -488,7 +473,6 @@ files = [ name = "intervaltree" version = "3.1.0" description = "Editable interval tree data structure for Python 2 and 3" -category = "main" optional = false python-versions = "*" files = [ @@ -502,7 +486,6 @@ sortedcontainers = ">=2.0,<3.0" name = "joblib" version = "1.2.0" description = "Lightweight pipelining with Python functions" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -514,7 +497,6 @@ files = [ name = "jsonschema" version = "4.17.3" description = "An implementation of JSON Schema validation for Python" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -534,7 +516,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "lxml" version = "4.9.2" description = "Powerful and Pythonic XML processing library combining libxml2/libxslt with the ElementTree API." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" files = [ @@ -627,7 +608,6 @@ source = ["Cython (>=0.29.7)"] name = "more-itertools" version = "9.1.0" description = "More routines for operating on iterables, beyond itertools" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -639,7 +619,6 @@ files = [ name = "networkx" version = "3.1" description = "Python package for creating and manipulating graphs and networks" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -658,7 +637,6 @@ test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"] name = "nltk" version = "3.8.1" description = "Natural Language Toolkit" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -684,7 +662,6 @@ twitter = ["twython"] name = "numpy" version = "1.24.3" description = "Fundamental package for array computing in Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -722,7 +699,6 @@ files = [ name = "obonet" version = "0.3.1" description = "Parse OBO formatted ontologies into networkx" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -740,7 +716,6 @@ dev = ["pre-commit", "pytest"] name = "openpyxl" version = "3.1.2" description = "A Python library to read/write Excel 2010 xlsx/xlsm files" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -755,7 +730,6 @@ et-xmlfile = "*" name = "orderedmultidict" version = "1.0.1" description = "Ordered Multivalue Dictionary" -category = "main" optional = false python-versions = "*" files = [ @@ -770,7 +744,6 @@ six = ">=1.8.0" name = "packaging" version = "23.1" description = "Core utilities for Python packages" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -782,7 +755,6 @@ files = [ name = "pandas" version = "1.5.3" description = "Powerful data structures for data analysis, time series, and statistics" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -816,10 +788,7 @@ files = [ ] [package.dependencies] -numpy = [ - {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, - {version = ">=1.23.2", markers = "python_version >= \"3.11\""}, -] +numpy = {version = ">=1.23.2", markers = "python_version >= \"3.11\""} python-dateutil = ">=2.8.1" pytz = ">=2020.1" @@ -830,7 +799,6 @@ test = ["hypothesis (>=5.5.3)", "pytest (>=6.0)", "pytest-xdist (>=1.31)"] name = "pluggy" version = "1.0.0" description = "plugin and hook calling mechanisms for python" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -846,7 +814,6 @@ testing = ["pytest", "pytest-benchmark"] name = "psycopg2-binary" version = "2.9.7" description = "psycopg2 - Python-PostgreSQL Database Adapter" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -916,7 +883,6 @@ files = [ name = "py" version = "1.11.0" description = "library with cross-python path, ini-parsing, io, code, log facilities" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -928,7 +894,6 @@ files = [ name = "pybedtools" version = "0.9.0" description = "Wrapper around BEDTools for bioinformatics work" -category = "main" optional = false python-versions = "*" files = [] @@ -948,7 +913,6 @@ resolved_reference = "6021d28b88879057247f4e8fe93c776c98e36f41" name = "pyfaidx" version = "0.7.2.1" description = "pyfaidx: efficient pythonic random access to fasta subsequences" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -964,7 +928,6 @@ six = "*" name = "pymysql" version = "1.0.3" description = "Pure Python MySQL Driver" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -980,7 +943,6 @@ rsa = ["cryptography"] name = "pypika" version = "0.48.9" description = "A SQL query builder API for Python" -category = "main" optional = false python-versions = "*" files = [ @@ -991,7 +953,6 @@ files = [ name = "pyreadline3" version = "3.4.1" description = "A python implementation of GNU readline." -category = "main" optional = false python-versions = "*" files = [ @@ -1003,7 +964,6 @@ files = [ name = "pyrsistent" version = "0.19.3" description = "Persistent/Functional/Immutable data structures" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1040,7 +1000,6 @@ files = [ name = "pysam" version = "0.21.0" description = "pysam - a python module for reading, manipulating and writing genomic data sets." -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1074,7 +1033,6 @@ cython = "*" name = "pytest" version = "7.3.1" description = "pytest: simple powerful testing with Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1095,7 +1053,6 @@ testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "no name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -1110,7 +1067,6 @@ six = ">=1.5" name = "pytz" version = "2023.3" description = "World timezone definitions, modern and historical" -category = "main" optional = false python-versions = "*" files = [ @@ -1122,7 +1078,6 @@ files = [ name = "pyyaml" version = "6.0" description = "YAML parser and emitter for Python" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1172,7 +1127,6 @@ files = [ name = "regex" version = "2023.3.23" description = "Alternative regular expression module, to replace re." -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1242,7 +1196,6 @@ files = [ name = "requests" version = "2.28.2" description = "Python HTTP for Humans." -category = "main" optional = false python-versions = ">=3.7, <4" files = [ @@ -1264,7 +1217,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "retry" version = "0.9.2" description = "Easy to use retry decorator." -category = "main" optional = false python-versions = "*" files = [ @@ -1280,7 +1232,6 @@ py = ">=1.4.26,<2.0.0" name = "scikit-learn" version = "1.2.2" description = "A set of python modules for machine learning and data mining" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1323,7 +1274,6 @@ tests = ["black (>=22.3.0)", "flake8 (>=3.8.2)", "matplotlib (>=3.1.3)", "mypy ( name = "scipy" version = "1.9.3" description = "Fundamental algorithms for scientific computing in Python" -category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1362,7 +1312,6 @@ test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "sciki name = "semver" version = "2.13.0" description = "Python helper for Semantic Versioning (http://semver.org/)" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -1374,7 +1323,6 @@ files = [ name = "setuptools" version = "67.7.2" description = "Easily download, build, install, upgrade, and uninstall Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1391,7 +1339,6 @@ testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs ( name = "simplejson" version = "3.19.1" description = "Simple, fast, extensible JSON encoder/decoder for Python" -category = "main" optional = false python-versions = ">=2.5, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -1486,7 +1433,6 @@ files = [ name = "six" version = "1.16.0" description = "Python 2 and 3 compatibility utilities" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -1498,7 +1444,6 @@ files = [ name = "slack-sdk" version = "3.21.2" description = "The Slack API Platform SDK for Python" -category = "main" optional = false python-versions = ">=3.6.0" files = [ @@ -1514,7 +1459,6 @@ testing = ["Flask (>=1,<2)", "Flask-Sockets (>=0.2,<1)", "Jinja2 (==3.0.3)", "We name = "sortedcontainers" version = "2.4.0" description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set" -category = "main" optional = false python-versions = "*" files = [ @@ -1526,7 +1470,6 @@ files = [ name = "soupsieve" version = "2.4.1" description = "A modern CSS selector implementation for Beautiful Soup." -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1538,7 +1481,6 @@ files = [ name = "sqlitedict" version = "2.1.0" description = "Persistent dict in Python, backed up by sqlite3 and pickle, multithread-safe." -category = "main" optional = false python-versions = "*" files = [ @@ -1549,7 +1491,6 @@ files = [ name = "tatsu" version = "5.8.2" description = "TatSu takes a grammar in a variation of EBNF as input, and outputs a memoizing PEG/Packrat parser in Python." -category = "main" optional = false python-versions = ">=3.10" files = [ @@ -1564,7 +1505,6 @@ future-regex = ["regex"] name = "textblob" version = "0.15.3" description = "Simple, Pythonic text processing. Sentiment analysis, part-of-speech tagging, noun phrase parsing, and more." -category = "main" optional = false python-versions = "*" files = [ @@ -1579,7 +1519,6 @@ nltk = ">=3.1" name = "threadpoolctl" version = "3.1.0" description = "threadpoolctl" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1591,7 +1530,6 @@ files = [ name = "throttler" version = "1.2.2" description = "Zero-dependency Python package for easy throttling with asyncio support" -category = "main" optional = false python-versions = "*" files = [ @@ -1606,7 +1544,6 @@ dev = ["aiohttp (>=3.8)", "codecov (>=2.1)", "flake8 (>=4.0)", "pytest (>=7.0)", name = "tqdm" version = "4.65.0" description = "Fast, Extensible Progress Meter" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1627,7 +1564,6 @@ telegram = ["requests"] name = "urllib3" version = "1.26.15" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" files = [ @@ -1643,4 +1579,4 @@ socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"] [metadata] lock-version = "2.0" python-versions = "^3.11" -content-hash = "af65604dd521498a5a57f8547f7e2d1ca725e3c8c80866d369464b8095ce9653" +content-hash = "aa57860f00b864bac8e5392e8ecb850259cfc039e226a9f10a30bb5b8aff33b3"