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<title>Week 7</title>
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Set-up
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Workshop Notes
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Git Basics
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GitHub Basics
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More Git Skills
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RStudio Cloud 1
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RStudio Cloud 2
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<h1 class="title toc-ignore">Week 7</h1>
</div>
<div id="roxygen2-and-pkgdown" class="section level2">
<h2>Roxygen2 and pkgdown</h2>
<ul>
<li><a href="https://youtu.be/UYKezKp5dkY">Lecture video</a></li>
<li><a href="week7-roxygen.html">The lecture notes</a></li>
</ul>
<p>Links to resources for <strong>pkgdown</strong> sites:</p>
<ul>
<li>The NOAA branded <strong>pkgdown template</strong> for you to clone (<a href="https://github.com/RWorkflow-Workshop-2021/pkgdown-template">repo</a>, <a href="https://rworkflow-workshop-2021.github.io/pkgdown-template/">webpage</a>)</li>
<li><a href="https://github.com/nmfs-fish-tools/Resources">FIT Resources</a> <code>LICENSE</code> file, <code>Disclaimer.md</code> and NOAA footer for your packages here.</li>
<li><a href="https://noaa-fisheries-integrated-toolbox.github.io/resources/workshops/NOAA-pkgdown/">FIT NOAA Themed pkgdown</a>. The <strong>pkgdown template</strong> repo uses the information from this.</li>
<li><a href="https://noaa-fisheries-integrated-toolbox.github.io/resources/">FIT Resources blog</a> Scroll down the navbar on left to see coding resources.</li>
</ul>
</div>
<div id="q-a" class="section level2">
<h2>Q & A</h2>
<div id="badges" class="section level3">
<h3>Badges</h3>
<p>Check out <code>usethis::use_badges()</code>. You’ll want to make sure your <code>Readme.md</code> file has</p>
<pre><code><!-- badges: start -->
<!-- badges: end --></code></pre>
<p>So <strong>usethis</strong> knows where to put the badge code.</p>
</div>
<div id="github-pages" class="section level3">
<h3>GitHub Pages</h3>
<p>With the last 2 <strong>pkgdown</strong> sites that I put up on GitHub Pages, I had some trouble where GitHub was only showing a page made from the Readme file and not the <strong>pkgdown</strong> site even though I had the GitHub Pages settings done correctly. so on my GitHub repository under Settings > GitHub Pages > branch = main and folder = docs.</p>
<p>To solve, I changed branch = None in Settings > GitHub Pages. That turns off GitHub Pages, then I immediately reset branch = main and folder = docs and hit Save. The <strong>pkgdown</strong> site then appeared within 30 seconds or so.</p>
</div>
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<hr>
<div style="text-align: center">
<i class="fas fa-cubes"></i> NWFSC Math Bio Program <i class="fas fa-cubes"></i>
</div>
</div>
</div>
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