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week1.html
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Week 1 RStudio + Version Control
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Week 2 More Git/GitHub
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Week 3 GitHub
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Week 4 R Markdown
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Week 5 ggplot2
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Week 6 packages
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Week 7 roxygen and pkgdown
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Week 8 more packages
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<h1 class="title toc-ignore">Week 1</h1>
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<div id="introduction-to-workflow-using-rstudio-and-gitgithub." class="section level2">
<h2>Introduction to workflow using RStudio and Git/GitHub.</h2>
<ul>
<li><a href="week1-rstudio.html">The lecture notes</a></li>
<li><a href="https://youtu.be/8YyNtEkKCgY">Lecture video</a></li>
</ul>
<p><em>Note at minute 39 or so in the video, I show how to clone a GitHub repo using RStudio. However this requires that RStudio knows where <code>git.exe</code> is. For week 2, I changed to cloning using GitHub Desktop, which doesn’t require using Git in RStudio at all. So for the Git/GitHub parts, I would go to the Week 2 video.</em></p>
</div>
<div id="session-questions-and-comments" class="section level2">
<h2>Session questions and comments</h2>
<ul>
<li>Here are some shorter videos of the workflows that I showed during Week 1.
<ul>
<li>Connecting GitHub Desktop to your GitHub account. <a href="https://youtu.be/AiRrSwQte5k">Video</a></li>
<li>Making a repo on GitHub and getting that into RStudio and GitHub Desktop <a href="https://www.youtube.com/watch?v=jPya6iDik6M">Video</a></li>
<li>Getting a repo on GitHub into RStudio Cloud. Watch the first part of the previous video if you need to see how to create a repo on GitHub. <a href="https://youtu.be/w6fivjMGZVo">Video</a></li>
<li>Connecting Git and RStudio Desktop. You can use Git inside RStudio (I do sometimes) but for 25 to 50% of people there is much suffering going this route while the set-up using GitHub Desktop is fast and easy. <a href="https://rverse-tutorials.github.io/RWorkflow-NWFSC-2020/set-up.html#Set_up_RStudio_to_use_Git">Notes</a>, <a href="https://happygitwithr.com/install-intro.html">Tutorial</a>, <a href="https://youtu.be/2QJQ6pNroVM">Video overview of the steps</a>.</li>
<li>Real workflow. This is a quick video of me working on the workshop webpage via RStudio. <a href="https://youtu.be/8aHOrfoQICk">Videl</a></li>
<li>Connecting GitHub and GitKraken. I downloaded <a href="https://www.gitkraken.com/">GitKraken</a> and this shows how to connect it to GitHub. <a href="https://youtu.be/_plekl0y8Rk">Video</a></li>
<li>Clone a repo from GitHub using GitKraken. <a href="https://youtu.be/axXwBEc4g0U">Video</a></li>
<li>Open a repo on your computer using GitKraken. <a href="https://youtu.be/sBxya8FjK7w">Video</a></li>
</ul></li>
<li>There was a question about how to get started organizing your code into projects when you have just a bunch of scripts. <a href="https://rverse-tutorials.github.io/RWorkflow-NWFSC-2020/week2-coding.html">This lecture</a> from 2020 discusses that. Skip the GitHub stuff at the start.</li>
</ul>
</div>
<hr>
<div style="text-align: center">
<i class="fas fa-cubes"></i> NWFSC Math Bio Program <i class="fas fa-cubes"></i>
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