plot_dataset_overlap.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plot_dataset_overlap.R
\name{plot_dataset_overlap}
\alias{plot_dataset_overlap}
\title{Plot inter-study SNP overlap}
\usage{
plot_dataset_overlap(
  merged_DT,
  snp_filter = "!is.na(SNP)",
  filename = NA,
  formula_str = "~ SNP + Dataset",
  triangle = FALSE
)
}
\arguments{
\item{merged_DT}{Merged fine-mapping results data from
\link[echolocatoR]{finemap_loci}.}

\item{snp_filter}{Filter to use apply to SNPs before plotting.}

\item{filename}{Path to save file to as PNG.}

\item{formula_str}{Formula passed to \link[stats]{xtabs}.}

\item{triangle}{Plot correlation matrix as a square or a triangle.}
}
\description{
Cross-tabulate SNP overlap (after applying filter)
between each pair of studies.
}
\examples{
\dontrun{
    merged_DT <- echodata::get_Nalls2019_merged()
    merged_DT$Dataset <- rep(c("Dataset1","Dataset2"),nrow(merged_DT)/2)
    snp_xprod <- plot_dataset_overlap(merged_DT = merged_DT)
    
}
}
\seealso{
Other summarise: 
\code{\link{CS_bin_plot}()},
\code{\link{CS_counts_plot}()},
\code{\link{peak_overlap_plot}()},
\code{\link{super_summary_plot}()}
}
\concept{summarise}