plot_missense.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plot_missense.R
\name{plot_missense}
\alias{plot_missense}
\title{Plot any missense variants}
\usage{
plot_missense(
  merged_DT,
  snp_filter = "Support>0",
  label_yaxis = FALSE,
  x_label = "UCS missense\\nmutations",
  show.legend = TRUE,
  show_numbers = FALSE,
  show_plot = TRUE
)
}
\arguments{
\item{merged_DT}{Merged fine-mapping results data from
\link[echolocatoR]{finemap_loci}.}

\item{snp_filter}{Filter to use apply to SNPs before plotting.}

\item{label_yaxis}{Whether to label the y-axis.}

\item{x_label}{x-axis title.}

\item{show.legend}{logical. Should this layer be included in the legends?
\code{NA}, the default, includes if any aesthetics are mapped.
\code{FALSE} never includes, and \code{TRUE} always includes.
It can also be a named logical vector to finely select the aesthetics to
display.}

\item{show_numbers}{Whether to plot the numeric values or not.}

\item{show_plot}{Show plot.}
}
\description{
Plot any missense variants in fine-mapped data.
}
\examples{
\dontrun{
merged_DT <- echodata::get_Nalls2019_merged()
gg_missense <- plot_missense(
    merged_DT = merged_DT,
    snp_filter = "Support>0"
)
gg_missense <- plot_missense(
    merged_DT = merged_DT,
    snp_filter = "Consensus_SNP==TRUE"
)
}
}
\seealso{
Other annotate: 
\code{\link{annotate_missense}()},
\code{\link{biomart_snp_info}()},
\code{\link{biomart_snps_to_geneInfo}()},
\code{\link{haplor_epigenetics_enrichment}()},
\code{\link{haplor_epigenetics_summary}()},
\code{\link{haplor_haploreg}()},
\code{\link{haplor_regulomedb}()},
\code{\link{snps_by_mutation_type}()}
}
\concept{annotate}