cluster.yaml

__default__:
  queue: express
  cores: 1
  mem: 4000
  time: '180'
  name: $(basename $(pwd)):{rule}:{wildcards}
  output: logs/{rule}:{wildcards}.stdout
  error: logs/{rule}:{wildcards}.stderr
  himem: ''

VCFtoPLINK:
  time: '2:00'
  cores: 2
  mem: 8000

count_chr_pos:
  time: '1:00'
  cores: 2
  mem: 8000

generateGRM:
  time: '4:00'
  cores: 2
  mem: 8000

harmonise_phenotypes:
  time: '12:00'
  cores: 4
  mem: 400

run_PEER:
  time: '1:00'
  cores: 8
  mem: 3000

runMMQTL:
  time: '36:00'
  cores: 1
  mem: 3000
  queue: premium

prepare_leafcutter:
  time: '4:00'
  cores: 4
  mem: 3000

prepare_SUPPA:
  time: '4:00'
  cores: 4
  mem: 3000

prepare_edqtl:
  time: '4:00'
  cores: 4
  mem: 3000

mmQTLcollate:
  time: '24:00'
  cores: 8
  mem: 3000
  queue: premium

topCollate:
  time: '12:00'
  cores: 8
  mem: 3000

fullCollate:
  time: '24:00'
  cores: 8
  mem: 3000
  queue: premium