update-cache.yml

name: Update cache

on:
  schedule:
    - cron: "0 0 */7 * *"
  push:
    branches:
      - main

jobs:
  update_cache:
    runs-on: ubuntu-latest
    defaults:
      run:
          shell: bash -el {0}
    steps:
      - name: Checkout ARC
        uses: actions/checkout@v3
        
      - name: Cache RMG
        id: cache-rmg
        uses: actions/cache@v2
        with:
            path: RMG-Py
            key: ${{ runner.os }}-rmg-main

      - name: Checkout RMG
        uses: actions/checkout@v3
        with:
            repository: ReactionMechanismGenerator/RMG-Py
            path: RMG-Py
            ref: main
            fetch-depth: 1

      - name: Cache RMG-database
        id: cache-rmg-db
        uses: actions/cache@v2
        with:
            path: RMG-database
            key: ${{ runner.os }}-rmgdb-main

      - name: Checkout RMG-database
        uses: actions/checkout@v3
        with:
            repository: ReactionMechanismGenerator/RMG-database
            path: RMG-database
            ref: main
            fetch-depth: 1
        
      - name: Cache AutoTST
        id: cache-autotst
        uses: actions/cache@v2
        with:
            path: AutoTST
            key: ${{ runner.os }}-autotst-main
            restore-keys: |
                ${{ runner.os }}-autotst-
      - name: Checkout AutoTST
        if: steps.cache-autotst.outputs.cache-hit != 'true'
        uses: actions/checkout@v3
        with:
            repository: ReactionMechanismGenerator/AutoTST
            path: AutoTST
            ref: main
            fetch-depth: 1
    
      - name: Cache TS-GCN
        id: cache-tsgcn
        uses: actions/cache@v2
        with:
            path: TS-GCN
            key: ${{ runner.os }}-tsgcn-main
            restore-keys: |
                ${{ runner.os }}-tsgcn-
      - name: Checkout TS-GCN
        if: steps.cache-tsgcn.outputs.cache-hit != 'true'
        uses: actions/checkout@v3
        with:
            repository: ReactionMechanismGenerator/TS-GCN
            path: TS-GCN
            ref: main
            fetch-depth: 1
        
      - name: Cache KinBot
        id: cache-kinbot
        uses: actions/cache@v2
        with:
            path: KinBot
            key: ${{ runner.os }}-kinbot-2.0.6
            restore-keys: |
                ${{ runner.os }}-kinbot-
    
      - name: Checkout Kinbot 2.0.6
        if: steps.cache-kinbot.outputs.cache-hit != 'true'
        uses: actions/checkout@v3
        with:
            repository: zadorlab/KinBot
            path: KinBot
            ref: v2.0.6
            fetch-depth: 1
    
      - name: Cache Packages Packages
        uses: actions/cache@v2
        env:
            CACHE_NUMBER: 0
        with:
            path: ~/conda_pkgs_dir
            key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
      - name: Setup ARC Env
        uses: conda-incubator/setup-miniconda@v3
        with:
            auto-update-conda: true
            environment-file: environment.yml
            activate-environment: arc_env
            miniconda-version: latest
            conda-solver: libmamba
    
      - name: Cache ARC env
        uses: actions/cache@v2
        with:
            path: ${{ env.CONDA }}/envs
            key: conda-${{ runner.os }}--${{ runner.arch }}--${{ env.CACHE_NUMBER}}
        env:
            # Increase this value to reset cache if etc/example-environment.yml has not changed
            CACHE_NUMBER: 0
        id: cache-arc-env
      - name: Update environment
        run: mamba env update -n arc_env -f environment.yml
        if: steps.cache-arc-env.outputs.cache-hit != 'true'