diff --git a/.travis.yml b/.travis.yml index 5ae5c18979..c64871a62e 100644 --- a/.travis.yml +++ b/.travis.yml @@ -7,6 +7,10 @@ virtualenv: env: global: - secure: "L2ja+ZnV83w4qG3E8FwTjm0D6IWNOnj5wuFOjYTwbzQP4OAgLAWBzCMtxzWy5sMxFLtRgkswBH1d5f5kg8Ab7GIyAMFgQwe8UFqMJ+N05QNszE1mJkAvJtv2XN7669XXQhTt5EXfHrCcGZaODVnI2CEA8GB5DxiHO2Lcqf/xvgE=" + - secure: fd2HDrPvxMLHOXar7HyUZh0v+C5WkCfzhRzlBn+aePayrQn5FFrT68ENyr1v4sIpKESxYUOAwqtpDPUhF3M596GgGeU5yQc4q+sZmfwbVrjOvKCYuA5037vHmkWP1+mxQtRJMz/DC6vAoyasZkN5WD2n6WYIGupu/FxIJzYyzMM= + - secure: N/LNeY6kM4g2TOWiwuZhevrFOVSSDXj42hOWmbWVfwjLxVTMpFO29os3TiXxod8q6ezpDkXi5yVcGGtKLQZr6CgoiGW8zS+UKsUntKH4HI4dZdK+hKAKwaWU641aDNIq/XqSzNJ8v7ZmLLo3sk878aTHODPRPBfb7Q9wk2l3sDs= + - secure: jSRuOGP7vghJet6oelSprSLGBd/eYuUaU3UM+QnZW0GhETWyXxjg/17hpl2R2NzVLhVz2m0KRaoT9JmG+EyJ9NW47JwTaKL+CNtxg2gPTM3/6iVNdVrXM1vOTvaJhtZ/C2SbLDg/+JPLLUMfT9/9oXkiz+enh7VzZuZDywgoTsw= + - secure: Y4tbLIssPDkRQZp2lLUtou/YZr3APmhfD3o3tUcv1mqveeg6NBYZ8o6bLSULO3wdm88s1sug23VbP+Gt74XN4Ylbt4GjhKkOxvd+Vut7dR0o0cxsH372AWHYPicCOkuYAfeDK5cqxeXkGibHW1eBdduAAT82wcW5NcD9USyv9ig= addons: apt: packages: @@ -34,7 +38,7 @@ install: script: - make test-database - - make test + - make test-all - cd $TRAVIS_BUILD_DIR after_success: diff --git a/Makefile b/Makefile deleted file mode 100644 index 690b660f03..0000000000 --- a/Makefile +++ /dev/null @@ -1,8 +0,0 @@ -################################################################################ -# -# Makefile for RMG-database -# -################################################################################ - -test-database: - nosetests -v -d testing/databaseTest.py diff --git a/input/kinetics/families/1,4_Linear_birad_scission/groups.py b/input/kinetics/families/1,4_Linear_birad_scission/groups.py index b81526634b..2056d37f3b 100644 --- a/input/kinetics/families/1,4_Linear_birad_scission/groups.py +++ b/input/kinetics/families/1,4_Linear_birad_scission/groups.py @@ -38,3 +38,39 @@ """ ) + +forbidden( + label = "N2O2a", + group = +""" +multiplicity [3] +1 *3 O u0 p2 c0 {2,S} {3,S} +2 *2 N u0 p1 c0 {1,S} {4,D} +3 *4 O u1 p2 c0 {1,S} +4 *1 N u1 p1 c0 {2,D} +""", + shortDesc = u"""""", + longDesc = +u""" +N2O2 reacts in this family to form a singlet O2 (O=O) +See RMG-Py issue #1020 +""", +) + +forbidden( + label = "N2O2b", + group = +""" +multiplicity [3] +1 *2 O u0 p2 c0 {2,S} {3,S} +2 *3 N u0 p1 c0 {1,S} {4,D} +3 *1 O u1 p2 c0 {1,S} +4 *4 N u1 p1 c0 {2,D} +""", + shortDesc = u"""""", + longDesc = +u""" +Same as above, inverse atom labeling +""", +) + diff --git a/input/kinetics/families/Oa_R_Recombination/NIST/dictionary.txt b/input/kinetics/families/Birad_R_Recombination/NIST/dictionary.txt similarity index 100% rename from input/kinetics/families/Oa_R_Recombination/NIST/dictionary.txt rename to input/kinetics/families/Birad_R_Recombination/NIST/dictionary.txt diff --git a/input/kinetics/families/Oa_R_Recombination/NIST/reactions.py b/input/kinetics/families/Birad_R_Recombination/NIST/reactions.py similarity index 100% rename from input/kinetics/families/Oa_R_Recombination/NIST/reactions.py rename to input/kinetics/families/Birad_R_Recombination/NIST/reactions.py diff --git a/input/kinetics/families/Oa_R_Recombination/groups.py b/input/kinetics/families/Birad_R_Recombination/groups.py similarity index 81% rename from input/kinetics/families/Oa_R_Recombination/groups.py rename to input/kinetics/families/Birad_R_Recombination/groups.py index 8f6d9aa327..1d5e03bcfb 100644 --- a/input/kinetics/families/Oa_R_Recombination/groups.py +++ b/input/kinetics/families/Birad_R_Recombination/groups.py @@ -1,16 +1,16 @@ #!/usr/bin/env python # encoding: utf-8 -name = "Oa_R_Recombination/groups" +name = "Birad_R_Recombination/groups" shortDesc = u"" longDesc = u""" -This reaction family is reserved for O_atom (triplet only). The forbidden groups -at the bottom prevent it from reacting with other forms of O. +This reaction family is reserved for recombination of O_atom, S_atom, N_R_birad (triplets only). +The forbidden groups at the bottom prevent it from reacting with other forms of O, S, NH. """ -template(reactants=["Y_rad", "Oa"], products=["YO."], ownReverse=False) +template(reactants=["Y_rad", "Birad"], products=["YOS."], ownReverse=False) -reverse = "RO_Bond_Dissociation" +reverse = "ROS_Bond_Dissociation" recipe(actions=[ ['FORM_BOND', '*1', 1, '*2'], @@ -30,10 +30,95 @@ entry( index = 2, + label = "Birad", + group = +""" +1 *2 R!H u2 +""", + kinetics = None, +) + +entry( + index = 50, label = "Oa", group = """ -1 *2 O u2 +1 *2 O u2 p2 +""", + kinetics = None, +) + +entry( + index = 51, + label = "Sa", + group = +""" +1 *2 S u2 p2 +""", + kinetics = None, +) + +entry( + index = 52, + label = "N_R_birad", + group = +""" +1 *2 N u2 p1 +""", + kinetics = None, +) + +entry( + index = 53, + label = "N_birad/H", + group = +""" +1 *2 N u2 p1 {2,S} +2 H u0 p0 {1,S} +""", + kinetics = None, +) + +entry( + index = 54, + label = "N_birad/C", + group = +""" +1 *2 N u2 p1 {2,S} +2 C ux {1,S} +""", + kinetics = None, +) + +entry( + index = 55, + label = "N_birad/O", + group = +""" +1 *2 N u2 p1 {2,S} +2 O ux {1,S} +""", + kinetics = None, +) + +entry( + index = 56, + label = "N_birad/N", + group = +""" +1 *2 N u2 p1 {2,S} +2 N ux {1,S} +""", + kinetics = None, +) + +entry( + index = 57, + label = "N_birad/S", + group = +""" +1 *2 N u2 p1 {2,S} +2 S ux {1,S} """, kinetics = None, ) @@ -673,48 +758,82 @@ L5: C_rad/Cs L5: C_rad/TDMustO L4: C_rad/ThreeDe -L1: Oa +L1: Birad + L2: Oa + L2: Sa + L2: N_R_birad + L3: N_birad/H + L3: N_birad/C + L3: N_birad/O + L3: N_birad/N + L3: N_birad/S """ ) forbidden( - label = "O2_1centeredBirad", + label = "O2_p1", group = """ -1 *1 O u2 p1 {2,S} -2 R u0 {1,S} +1 *2 O u2 p1 """, shortDesc = u"""""", longDesc = u""" - +This family is intended to handle +[O] u2 p2, or +[S] u2 p2, or +[NH] u2 p1, +instances with a different number of lone pairs are forbidden """, ) - + forbidden( - label = "O2_birad", + label = "S2_p1", group = """ -1 *1 O u1 p2 {2,S} -2 O u1 p2 {1,S} +1 *2 S u2 p1 """, shortDesc = u"""""", longDesc = u""" - +This family is intended to handle +[O] u2 p2, or +[S] u2 p2, or +[NH] u2 p1, +instances with a different number of lone pairs are forbidden """, ) - + forbidden( - label = "O_atom_singlet", + label = "S2_p0", group = """ -1 *1 O u0 p3 +1 *2 S u2 p0 """, shortDesc = u"""""", longDesc = u""" +This family is intended to handle +[O] u2 p2, or +[S] u2 p2, or +[NH] u2 p1, +instances with a different number of lone pairs are forbidden +""", +) +forbidden( + label = "OS_chain", + group = +""" +1 *1 [O,S] u1 p2 {2,S} +2 [O,S] u0 p2 {1,S} {3,S} +3 [O,S] u0 p2 {2,S} {4,S} +4 [O,S] u1 p2 {3,S} +""", + shortDesc = u"""""", + longDesc = +u""" +Group added to forbid this family from forming S-O chains """, ) diff --git a/input/kinetics/families/Birad_R_Recombination/rules.py b/input/kinetics/families/Birad_R_Recombination/rules.py new file mode 100644 index 0000000000..4f33dec738 --- /dev/null +++ b/input/kinetics/families/Birad_R_Recombination/rules.py @@ -0,0 +1,50 @@ +#!/usr/bin/env python +# encoding: utf-8 + +name = "Birad_R_Recombination/rules" +shortDesc = u"" +longDesc = u""" + +""" +entry( + index = 1000, + label = "Y_rad;Oa", + kinetics = ArrheniusEP( + A = (1e+13, 'cm^3/(mol*s)'), + n = 0, + alpha = 0, + E0 = (0, 'kcal/mol'), + Tmin = (300, 'K'), + Tmax = (1500, 'K'), + ), + rank = 2, +) + +entry( + index = 2000, + label = "Y_rad;Sa", + kinetics = ArrheniusEP( + A = (1e+13, 'cm^3/(mol*s)'), + n = 0, + alpha = 0, + E0 = (0, 'kcal/mol'), + Tmin = (300, 'K'), + Tmax = (1500, 'K'), + ), + rank = 2, +) + +entry( + index = 2000, + label = "Y_rad;N_R_birad", + kinetics = ArrheniusEP( + A = (1e+13, 'cm^3/(mol*s)'), + n = 0, + alpha = 0, + E0 = (0, 'kcal/mol'), + Tmin = (300, 'K'), + Tmax = (1500, 'K'), + ), + rank = 2, +) + diff --git a/input/kinetics/families/Birad_R_Recombination/training/dictionary.txt b/input/kinetics/families/Birad_R_Recombination/training/dictionary.txt new file mode 100644 index 0000000000..aacc50825b --- /dev/null +++ b/input/kinetics/families/Birad_R_Recombination/training/dictionary.txt @@ -0,0 +1,57 @@ +O +multiplicity 3 +1 *2 O u2 p2 c0 + +S +multiplicity 3 +1 *2 S u2 p2 c0 + +NH +multiplicity 3 +1 *2 N u2 p1 c0 {2,S} +2 H u0 p0 c0 {1,S} + +HSO +multiplicity 2 +1 S u0 p2 c0 {2,S} {3,S} +2 *1 O u1 p2 c0 {1,S} +3 H u0 p0 c0 {1,S} + +HSOO +multiplicity 2 +1 S u0 p2 c0 {2,S} {4,S} +2 *1 O u0 p2 c0 {1,S} {3,S} +3 *2 O u1 p2 c0 {2,S} +4 H u0 p0 c0 {1,S} + +NO +multiplicity 2 +1 *1 N u1 p1 c0 {2,D} +2 O u0 p2 c0 {1,D} + +NO2_p +multiplicity 2 +1 *1 N u0 p1 c0 {2,D} {3,S} +2 O u0 p2 c0 {1,D} +3 *2 O u1 p2 c0 {1,S} + +NO2_r +multiplicity 2 +1 O u0 p2 c0 {2,D} +2 *1 N u1 p0 c+1 {1,D} {3,S} +3 O u0 p3 c-1 {2,S} + +HNNO2 +multiplicity 2 +1 *2 N u1 p1 c0 {2,S} {3,S} +2 H u0 p0 c0 {1,S} +3 *1 N u0 p0 c+1 {1,S} {4,S} {5,D} +4 O u0 p3 c-1 {3,S} +5 O u0 p2 c0 {3,D} + +SNO +multiplicity 2 +1 *2 S u1 p2 c0 {2,S} +2 *1 N u0 p1 c0 {1,S} {3,D} +3 O u0 p2 c0 {2,D} + diff --git a/input/kinetics/families/Birad_R_Recombination/training/reactions.py b/input/kinetics/families/Birad_R_Recombination/training/reactions.py new file mode 100644 index 0000000000..bd03120a58 --- /dev/null +++ b/input/kinetics/families/Birad_R_Recombination/training/reactions.py @@ -0,0 +1,91 @@ +#!/usr/bin/env python +# encoding: utf-8 + +name = "Birad_R_Recombination/training" +shortDesc = u"Kinetics used to train group additivity values" +longDesc = u""" +Put kinetic parameters for reactions to use as a training set for fitting +group additivity values in this file. +""" + +entry( + index = 1, + label = "NH + NO2_r <=> HNNO2", + degeneracy = 1, + kinetics = Arrhenius(A=(1.42e+16, 'cm^3/(mol*s)'), n=-0.75, Ea=(1226, 'cal/mol'), T0=(1, 'K')), + rank = 3, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +Part of the "NOx" subset +T range: 500-3000 K +calculations done at the B3LYP/6-311D(d,p)//B3LYP/6-311D(d,p) level of theory +D. Chakraborty, C.C. Hsu, M.C. Lin, J. Chem. Phys., 1998, 109, 8887, doi: 10.1063/1.477560 +k3a, p. 8893 +No stabilization at low pressures, only K3a_inf is given (k3a_low = 0) +""", +) + +entry( + index = 2, + label = "S + NO <=> SNO", + degeneracy = 1, + kinetics = Arrhenius(A=(1.3e+14, 'cm^3/(mol*s)'), n=0.24, Ea=(0, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (800, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +A. Goumri, D.D. Shao, P. Marshall, J. Chem. Phys., 2004, 121, 9999, doi: 10.1063/1.1806419 +Experimentally measured, and PES verified using CBS-QB3 +Originally a Troe expression was given, only k_inf is taken here +kinetics = Troe( + arrheniusHigh = Arrhenius(A=(1.3e+14, 'cm^3/(mol*s)'), n=0.24, Ea=(0, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (800, 'K')), + arrheniusLow = Arrhenius(A=(2.25e+15, 'cm^6/(mol^2*s)'), n=0, Ea=(-1868, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (800, 'K')), + alpha=1, T3=(1e-30, 'K'), T1=(1e+30, 'K'), efficiencies={}), +""", +) + + +#entry( +# index = 3, +# label = "HSOO <=> HSO + O", +# degeneracy = 1, +# kinetics = Arrhenius(A=(2.01e+19, 's^-1'), n=-1.07, Ea=(28377, 'cal/mol'), T0=(1, 'K'), Tmin = (200, 'K'), Tmax = (2000, 'K')), +# rank = 2, +# shortDesc = u"""Training reaction from kinetics library: SOxNOx""", +# longDesc = +#u""" +#Taken from the SOxNOx library, Part of the "SOx" subset +#T range: 200-2000 K +#A. Goumri, J-D.R. Rocha, D. Laakso, C.E. Smith, P. Marshall, J. Phys. Chem. A, 1999, 103(51), 11328–11335 doi: 10.1021/jp9924070 +#Table 7 on p. 11333 +#calculations done at the QCISD(T)/6-311+G(3df,2p)//MP2=FULL/6-31G(d) level of theory +#Originally a Troe expression was given, only k_inf is taken here +# +#The reverse rate training reaction here is commented-out until better thermo groups for oxigenated sulfur species +#are added to RMG to calculate the forward rate +# +#""", +#) + +#entry( +# index = 4, +# label = "NO2_p <=> NO + O", +# degeneracy = 1, +# kinetics = Arrhenius(A=(3.98e+14, 's^-1'), n=0, Ea=(71700, 'cal/mol'), T0=(1, 'K'), Tmin = (1350, 'K'), Tmax = (2100, 'K')), +# rank = 1, +# shortDesc = u"""Training reaction from kinetics library: SOxNOx""", +# longDesc = +#u""" +#Taken from the SOxNOx library, Part of the "NO2 decomposition" subset +#T range: 1350-2100 K +#M. Rohrig, E.L. Petersen, D.F. Davidson, R.K. Hanson, Int. J. Chem. Kin., 1997, 29(7), 483-493, doi: 10.1002/(SICI)1097-4601(1997)29:7<483::AID-KIN2>3.0.CO;2-Q +#Shock tube measurement +#Originally a Troe expression was given, only k_inf is taken here +# +#The reverse rate training reaction here is commented-out until better thermo groups for oxigenated sulfur species +#are added to RMG to calculate the forward rate +# +#""", +#) + diff --git a/input/kinetics/families/H_Abstraction/groups.py b/input/kinetics/families/H_Abstraction/groups.py index b8792a9e39..a7d9de3b91 100644 --- a/input/kinetics/families/H_Abstraction/groups.py +++ b/input/kinetics/families/H_Abstraction/groups.py @@ -3422,6 +3422,16 @@ """, kinetics = None, ) + +entry( + index = 600, + label = "S_atom_triplet", + group = +""" +1 *3 S u2 +""", + kinetics = None, +) entry( index = 190, @@ -6597,6 +6607,7 @@ L3: CH_doublet L2: Y_1centerbirad L3: O_atom_triplet + L3: S_atom_triplet L3: CH2_triplet L3: NH_triplet L2: Y_rad diff --git a/input/kinetics/families/H_Abstraction/training/dictionary.txt b/input/kinetics/families/H_Abstraction/training/dictionary.txt index 6f9545c602..09b7006d33 100644 --- a/input/kinetics/families/H_Abstraction/training/dictionary.txt +++ b/input/kinetics/families/H_Abstraction/training/dictionary.txt @@ -222,6 +222,12 @@ CH2O 3 *2 H u0 p0 c0 {1,S} 4 H u0 p0 c0 {1,S} +CH2O_p +1 *3 C u0 p0 c0 {2,D} {3,S} {4,S} +2 O u0 p2 c0 {1,D} +3 *1 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} + C4H9O-2 multiplicity 2 1 C u0 p0 c0 {2,S} {4,S} {6,S} {7,S} @@ -525,7 +531,7 @@ C4H8O-3 12 O u0 p2 c0 {4,D} 13 *2 H u0 p0 c0 {4,S} -HO2 +HO2_r3 multiplicity 2 1 O u0 p2 c0 {2,S} {3,S} 2 *3 O u1 p2 c0 {1,S} @@ -780,12 +786,6 @@ multiplicity 2 10 H u0 p0 c0 {4,S} 11 H u0 p0 c0 {4,S} -CHO -multiplicity 2 -1 *3 C u1 p0 c0 {2,D} {3,S} -2 O u0 p2 c0 {1,D} -3 H u0 p0 c0 {1,S} - C4H8-2 1 *1 C u0 p0 c0 {3,S} {5,S} {6,S} {7,S} 2 C u0 p0 c0 {4,S} {8,S} {9,S} {10,S} @@ -904,6 +904,16 @@ multiplicity 2 6 H u0 p0 c0 {2,S} 7 H u0 p0 c0 {2,S} +C2H5b +multiplicity 2 +1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} +2 *1 C u1 p0 c0 {1,S} {6,S} {7,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} +5 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {2,S} +7 H u0 p0 c0 {2,S} + C2H4 1 *1 C u0 p0 c0 {2,D} {3,S} {4,S} 2 C u0 p0 c0 {1,D} {5,S} {6,S} @@ -1038,6 +1048,10 @@ H2 1 *1 H u0 p0 c0 {2,S} 2 *2 H u0 p0 c0 {1,S} +H2_p +1 *2 H u0 p0 c0 {2,S} +2 *3 H u0 p0 c0 {1,S} + CH3O2 multiplicity 2 1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} @@ -1052,6 +1066,16 @@ multiplicity 2 1 *3 O u1 p2 c0 {2,S} 2 H u0 p0 c0 {1,S} +OH_p1 +multiplicity 2 +1 *1 O u1 p2 c0 {2,S} +2 H u0 p0 c0 {1,S} + +OH_p23 +multiplicity 2 +1 *3 O u1 p2 c0 {2,S} +2 *2 H u0 p0 c0 {1,S} + C4H10O-8 1 C u0 p0 c0 {2,S} {3,S} {5,S} {6,S} 2 C u0 p0 c0 {1,S} {4,S} {7,S} {8,S} @@ -1091,6 +1115,11 @@ H2O 2 *2 H u0 p0 c0 {1,S} 3 H u0 p0 c0 {1,S} +H2O_p +1 *3 O u0 p2 c0 {2,S} {3,S} +2 *2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} + C4H7O-4 multiplicity 2 1 C u0 p0 c0 {2,S} {3,S} {5,S} {6,S} @@ -1106,13 +1135,6 @@ multiplicity 2 11 H u0 p0 c0 {4,S} 12 H u0 p0 c0 {4,S} -CH3 -multiplicity 2 -1 *3 C u1 p0 c0 {2,S} {3,S} {4,S} -2 H u0 p0 c0 {1,S} -3 H u0 p0 c0 {1,S} -4 H u0 p0 c0 {1,S} - NH2 multiplicity 2 1 *3 N u1 p1 c0 {2,S} {3,S} @@ -1232,13 +1254,20 @@ CH4 4 H u0 p0 c0 {1,S} 5 H u0 p0 c0 {1,S} +CH4b +1 *1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} +2 *2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} +5 H u0 p0 c0 {1,S} + N2H3 multiplicity 2 -1 N u0 p1 c0 {2,S} {4,S} {5,S} -2 N u1 p1 c0 {1,S} {3,S} -3 H u0 p0 c0 {2,S} -4 H u0 p0 c0 {1,S} -5 H u0 p0 c0 {1,S} +1 N u0 p1 c0 {2,S} {4,S} {5,S} +2 *1 N u1 p1 c0 {1,S} {3,S} +3 H u0 p0 c0 {2,S} +4 H u0 p0 c0 {1,S} +5 H u0 p0 c0 {1,S} CH2CHNH multiplicity 2 @@ -1271,38 +1300,450 @@ multiplicity 2 2 *2 H u0 p0 c0 {1,S} 3 H u0 p0 c0 {1,S} -CH4b -1 *1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} +HNCO +1 *1 N u0 p1 c0 {2,D} {4,S} +2 C u0 p0 c0 {1,D} {3,D} +3 O u0 p2 c0 {2,D} +4 *2 H u0 p0 c0 {1,S} + +NCO +multiplicity 2 +1 *1 N u1 p1 c0 {2,D} +2 C u0 p0 c0 {1,D} {3,D} +3 O u0 p2 c0 {2,D} + +H2S +1 *3 S u0 p2 c0 {2,S} {3,S} 2 *2 H u0 p0 c0 {1,S} 3 H u0 p0 c0 {1,S} -4 H u0 p0 c0 {1,S} + +C4H10 +1 *1 C u0 p0 c0 {2,S} {5,S} {6,S} {7,S} +2 C u0 p0 c0 {1,S} {3,S} {8,S} {9,S} +3 C u0 p0 c0 {2,S} {4,S} {10,S} {11,S} +4 C u0 p0 c0 {3,S} {12,S} {13,S} {14,S} +5 *2 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {1,S} +8 H u0 p0 c0 {2,S} +9 H u0 p0 c0 {2,S} +10 H u0 p0 c0 {3,S} +11 H u0 p0 c0 {3,S} +12 H u0 p0 c0 {4,S} +13 H u0 p0 c0 {4,S} +14 H u0 p0 c0 {4,S} + +C4H8-6 +1 C u0 p0 c0 {2,S} {3,S} {5,S} {6,S} +2 C u0 p0 c0 {1,S} {7,S} {8,S} {9,S} +3 *1 C u0 p0 c0 {1,S} {4,D} {10,S} +4 C u0 p0 c0 {3,D} {11,S} {12,S} +5 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {2,S} +8 H u0 p0 c0 {2,S} +9 H u0 p0 c0 {2,S} +10 *2 H u0 p0 c0 {3,S} +11 H u0 p0 c0 {4,S} +12 H u0 p0 c0 {4,S} + +C3H4-1 +1 *1 C u0 p0 c0 {2,D} {4,S} {5,S} +2 C u0 p0 c0 {1,D} {3,D} +3 C u0 p0 c0 {2,D} {6,S} {7,S} +4 *2 H u0 p0 c0 {1,S} 5 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {3,S} +7 H u0 p0 c0 {3,S} -CH3b +C4H6 +1 C u0 p0 c0 {2,T} {5,S} +2 C u0 p0 c0 {1,T} {3,S} +3 *1 C u0 p0 c0 {2,S} {4,S} {6,S} {7,S} +4 C u0 p0 c0 {3,S} {8,S} {9,S} {10,S} +5 H u0 p0 c0 {1,S} +6 *2 H u0 p0 c0 {3,S} +7 H u0 p0 c0 {3,S} +8 H u0 p0 c0 {4,S} +9 H u0 p0 c0 {4,S} +10 H u0 p0 c0 {4,S} + +CH3_p1 multiplicity 2 1 *1 C u1 p0 c0 {2,S} {3,S} {4,S} 2 H u0 p0 c0 {1,S} 3 H u0 p0 c0 {1,S} -4 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} -C2H5b +CH3_p23 multiplicity 2 -1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} -2 *1 C u1 p0 c0 {1,S} {6,S} {7,S} +1 *3 C u1 p0 c0 {2,S} {3,S} {4,S} +2 *2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} + +CH3_r12 +multiplicity 2 +1 *1 C u1 p0 c0 {2,S} {3,S} {4,S} +2 *2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} + +CH3_r3 +multiplicity 2 +1 *3 C u1 p0 c0 {2,S} {3,S} {4,S} +2 H u0 p0 c0 {1,S} 3 H u0 p0 c0 {1,S} 4 H u0 p0 c0 {1,S} + +CH2CH2CH3 +multiplicity 2 +1 *1 C u1 p0 c0 {2,S} {3,S} {4,S} +2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 C u0 p0 c0 {1,S} {5,S} {6,S} {7,S} +5 C u0 p0 c0 {4,S} {8,S} {9,S} {10,S} +6 H u0 p0 c0 {4,S} +7 H u0 p0 c0 {4,S} +8 H u0 p0 c0 {5,S} +9 H u0 p0 c0 {5,S} +10 H u0 p0 c0 {5,S} + +CH3CHCH3 +multiplicity 2 +1 C u0 p0 c0 {2,S} {5,S} {6,S} {7,S} +2 *1 C u1 p0 c0 {1,S} {3,S} {4,S} +3 H u0 p0 c0 {2,S} +4 C u0 p0 c0 {2,S} {8,S} {9,S} {10,S} 5 H u0 p0 c0 {1,S} -6 H u0 p0 c0 {2,S} -7 H u0 p0 c0 {2,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {1,S} +8 H u0 p0 c0 {4,S} +9 H u0 p0 c0 {4,S} +10 H u0 p0 c0 {4,S} -HNCO +CH3CHCH2CH3 +multiplicity 2 +1 C u0 p0 c0 {2,S} {6,S} {7,S} {8,S} +2 *1 C u1 p0 c0 {1,S} {3,S} {4,S} +3 H u0 p0 c0 {2,S} +4 C u0 p0 c0 {2,S} {5,S} {9,S} {10,S} +5 C u0 p0 c0 {4,S} {11,S} {12,S} {13,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {1,S} +8 H u0 p0 c0 {1,S} +9 H u0 p0 c0 {4,S} +10 H u0 p0 c0 {4,S} +11 H u0 p0 c0 {5,S} +12 H u0 p0 c0 {5,S} +13 H u0 p0 c0 {5,S} + +CHCH2 +multiplicity 2 +1 *1 C u1 p0 c0 {2,S} {3,D} +2 H u0 p0 c0 {1,S} +3 C u0 p0 c0 {1,D} {4,S} {5,S} +4 H u0 p0 c0 {3,S} +5 H u0 p0 c0 {3,S} + +CH2CHCH2 +multiplicity 2 +1 C u0 p0 c0 {2,D} {6,S} {7,S} +2 C u0 p0 c0 {1,D} {3,S} {8,S} +3 *1 C u1 p0 c0 {2,S} {4,S} {5,S} +4 H u0 p0 c0 {3,S} +5 H u0 p0 c0 {3,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {1,S} +8 H u0 p0 c0 {2,S} + +CH2CHCHCH3 +multiplicity 2 +1 C u0 p0 c0 {2,D} {6,S} {7,S} +2 C u0 p0 c0 {1,D} {3,S} {8,S} +3 *1 C u1 p0 c0 {2,S} {4,S} {5,S} +4 H u0 p0 c0 {3,S} +5 C u0 p0 c0 {3,S} {9,S} {10,S} {11,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {1,S} +8 H u0 p0 c0 {2,S} +9 H u0 p0 c0 {5,S} +10 H u0 p0 c0 {5,S} +11 H u0 p0 c0 {5,S} + +CH2CCH2CH3 +multiplicity 2 +1 C u0 p0 c0 {2,D} {5,S} {6,S} +2 *1 C u1 p0 c0 {1,D} {3,S} +3 C u0 p0 c0 {2,S} {4,S} {7,S} {8,S} +4 C u0 p0 c0 {3,S} {9,S} {10,S} {11,S} +5 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {3,S} +8 H u0 p0 c0 {3,S} +9 H u0 p0 c0 {4,S} +10 H u0 p0 c0 {4,S} +11 H u0 p0 c0 {4,S} + +CH2CCH +multiplicity 2 +1 C u0 p0 c0 {2,D} {5,S} {6,S} +2 C u0 p0 c0 {1,D} {3,D} +3 *1 C u1 p0 c0 {2,D} {4,S} +4 H u0 p0 c0 {3,S} +5 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {1,S} + +CHCCHCH3 +multiplicity 2 +1 C u0 p0 c0 {2,T} {6,S} +2 C u0 p0 c0 {1,T} {3,S} +3 *1 C u1 p0 c0 {2,S} {4,S} {5,S} +4 H u0 p0 c0 {3,S} +5 C u0 p0 c0 {3,S} {7,S} {8,S} {9,S} +6 H u0 p0 c0 {1,S} +7 H u0 p0 c0 {5,S} +8 H u0 p0 c0 {5,S} +9 H u0 p0 c0 {5,S} + +O_rad +multiplicity 3 +1 *3 O u2 p2 c0 + +O2 +multiplicity 3 +1 *3 O u1 p2 c0 {2,S} +2 O u1 p2 c0 {1,S} + +HNCN +multiplicity 2 1 *1 N u0 p1 c0 {2,D} {4,S} 2 C u0 p0 c0 {1,D} {3,D} -3 O u0 p2 c0 {2,D} +3 N u1 p1 c0 {2,D} 4 *2 H u0 p0 c0 {1,S} -NCO +NCN +multiplicity 3 +1 N u1 p1 c0 {2,D} +2 C u0 p0 c0 {1,D} {3,D} +3 N u1 p1 c0 {2,D} + +HO2 +multiplicity 2 +1 O u0 p2 c0 {2,S} {3,S} +2 O u1 p2 c0 {1,S} +3 H u0 p0 c0 {1,S} + +N +multiplicity 4 +1 *3 N u3 p1 c0 + +NH_p +multiplicity 3 +1 *3 N u2 p1 c0 {2,S} +2 *2 H u0 p0 c0 {1,S} + +H_p +multiplicity 2 +1 *1 H u1 p0 c0 + +NO +multiplicity 2 +1 *3 N u1 p1 c0 {2,D} +2 O u0 p2 c0 {1,D} + +NO_p multiplicity 2 1 *1 N u1 p1 c0 {2,D} -2 C u0 p0 c0 {1,D} {3,D} +2 O u0 p2 c0 {1,D} + +N2H3_r +multiplicity 2 +1 *1 N u1 p1 c0 {2,S} {3,S} +2 H u0 p0 c0 {1,S} +3 N u0 p1 c0 {1,S} {4,S} {5,S} +4 H u0 p0 c0 {3,S} +5 H u0 p0 c0 {3,S} + +HNO_p +1 *3 N u0 p1 c0 {2,D} {3,S} +2 O u0 p2 c0 {1,D} +3 *2 H u0 p0 c0 {1,S} + +HNO_r +1 *1 N u0 p1 c0 {2,D} {3,S} +2 O u0 p2 c0 {1,D} +3 *2 H u0 p0 c0 {1,S} + +NO2 +multiplicity 2 +1 *3 O u1 p2 c0 {2,S} +2 N u0 p1 c0 {1,S} {3,D} +3 O u0 p2 c0 {2,D} + +NO2_p +multiplicity 2 +1 O u1 p2 c0 {2,S} +2 *1 N u0 p1 c0 {1,S} {3,D} +3 O u0 p2 c0 {2,D} + +NO3 +multiplicity 2 +1 N u0 p0 c+1 {2,D} {3,S} {4,S} +2 O u0 p2 c0 {1,D} +3 *3 O u1 p2 c0 {1,S} +4 O u0 p3 c-1 {1,S} + +NO3_p +multiplicity 2 +1 N u0 p0 c+1 {2,D} {3,S} {4,S} +2 O u0 p2 c0 {1,D} +3 *1 O u1 p2 c0 {1,S} +4 O u0 p3 c-1 {1,S} + +HNO3 +1 N u0 p0 c+1 {2,D} {3,S} {4,S} +2 O u0 p2 c0 {1,D} +3 *3 O u0 p2 c0 {1,S} {5,S} +4 O u0 p3 c-1 {1,S} +5 *2 H u0 p0 c0 {3,S} + +HNO3_r +1 N u0 p0 c+1 {2,D} {3,S} {4,S} +2 O u0 p2 c0 {1,D} +3 *1 O u0 p2 c0 {1,S} {5,S} +4 O u0 p3 c-1 {1,S} +5 *2 H u0 p0 c0 {3,S} + +HONO_p +1 *3 O u0 p2 c0 {2,S} {4,S} +2 N u0 p1 c0 {1,S} {3,D} 3 O u0 p2 c0 {2,D} +4 *2 H u0 p0 c0 {1,S} + +HONO_r +1 *1 O u0 p2 c0 {2,S} {4,S} +2 N u0 p1 c0 {1,S} {3,D} +3 O u0 p2 c0 {2,D} +4 *2 H u0 p0 c0 {1,S} + +NH3_r +1 *1 N u0 p1 c0 {2,S} {3,S} {4,S} +2 *2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} + +NH2_p +multiplicity 2 +1 *1 N u1 p1 c0 {2,S} {3,S} +2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} + +H2S_r +1 *1 S u0 p2 c0 {2,S} {3,S} +2 *2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} + +SH +multiplicity 2 +1 *3 S u1 p2 c0 {2,S} +2 H u0 p0 c0 {1,S} + +SH_p1 +multiplicity 2 +1 *1 S u1 p2 c0 {2,S} +2 H u0 p0 c0 {1,S} + +S_rad +multiplicity 3 +1 *3 S u2 p2 c0 + +HSS_r12 +multiplicity 2 +1 *1 S u0 p2 c0 {2,S} {3,S} +2 S u1 p2 c0 {1,S} +3 *2 H u0 p0 c0 {1,S} + +HSS_r3 +multiplicity 2 +1 S u0 p2 c0 {2,S} {3,S} +2 *3 S u1 p2 c0 {1,S} +3 H u0 p0 c0 {1,S} + +HSS_p1 +multiplicity 2 +1 *1 S u1 p2 c0 {2,S} +2 S u0 p2 c0 {1,S} {3,S} +3 H u0 p0 c0 {2,S} + +S2_p1 +multiplicity 3 +1 *1 S u1 p2 c0 {2,S} +2 S u1 p2 c0 {1,S} + +HSSH_p23 +1 *3 S u0 p2 c0 {2,S} {3,S} +2 S u0 p2 c0 {1,S} {4,S} +3 *2 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {2,S} + +HSSH_r12 +1 *1 S u0 p2 c0 {2,S} {3,S} +2 S u0 p2 c0 {1,S} {4,S} +3 *2 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {2,S} + +HCO_r3 +multiplicity 2 +1 *3 C u1 p0 c0 {2,S} {3,D} +2 H u0 p0 c0 {1,S} +3 O u0 p2 c0 {1,D} + +CHO_p1 +multiplicity 2 +1 *1 C u1 p0 c0 {2,S} {3,D} +2 H u0 p0 c0 {1,S} +3 O u0 p2 c0 {1,D} + +HCN_r +1 *1 C u0 p0 c0 {2,T} {3,S} +2 N u0 p1 c0 {1,T} +3 *2 H u0 p0 c0 {1,S} + +CN_p +multiplicity 2 +1 *1 C u1 p0 c0 {2,T} +2 N u0 p1 c0 {1,T} + +CH3SH_r1 +1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} +2 *1 S u0 p2 c0 {1,S} {6,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} +5 H u0 p0 c0 {1,S} +6 *2 H u0 p0 c0 {2,S} + +CH3S_p +multiplicity 2 +1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} +2 S u1 p2 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} +5 H u0 p0 c0 {1,S} + +CH3SH_r2 +1 *1 C u0 p0 c0 {2,S} {3,S} {4,S} {5,S} +2 S u0 p2 c0 {1,S} {6,S} +3 *2 H u0 p0 c0 {1,S} +4 H u0 p0 c0 {1,S} +5 H u0 p0 c0 {1,S} +6 H u0 p0 c0 {2,S} + +CH2SH_p +multiplicity 2 +1 C u1 p0 c0 {2,S} {3,S} {4,S} +2 H u0 p0 c0 {1,S} +3 H u0 p0 c0 {1,S} +4 S u0 p2 c0 {1,S} {5,S} +5 H u0 p0 c0 {4,S} + diff --git a/input/kinetics/families/H_Abstraction/training/reactions.py b/input/kinetics/families/H_Abstraction/training/reactions.py index a41e730e07..55c76e4006 100644 --- a/input/kinetics/families/H_Abstraction/training/reactions.py +++ b/input/kinetics/families/H_Abstraction/training/reactions.py @@ -284,7 +284,7 @@ entry( index = 500, - label = "CH2O + C4H7 <=> CHO + C4H8", + label = "CH2O + C4H7 <=> HCO_r3 + C4H8", degeneracy = 2, kinetics = Arrhenius( A = (0.0613, 'cm^3/(mol*s)'), @@ -956,7 +956,7 @@ entry( index = 525, - label = "C4H8-2 + HO2 <=> C4H7-2 + H2O2", + label = "C4H8-2 + HO2_r3 <=> C4H7-2 + H2O2", degeneracy = 6, kinetics = Arrhenius( A = (0.00346998, 'cm^3/(mol*s)'), @@ -1014,7 +1014,7 @@ entry( index = 529, - label = "C4H8-4 + HO2 <=> C4H7-4 + H2O2", + label = "C4H8-4 + HO2_r3 <=> C4H7-4 + H2O2", degeneracy = 2, kinetics = Arrhenius( A = (0.000508, 'cm^3/(mol*s)'), @@ -1223,7 +1223,7 @@ entry( index = 540, - label = "C4H8O-3 + HO2 <=> C4H7O-3 + H2O2", + label = "C4H8O-3 + HO2_r3 <=> C4H7O-3 + H2O2", degeneracy = 1, kinetics = Arrhenius( A = (0.000191, 'cm^3/(mol*s)', '*|/', 3), @@ -1524,10 +1524,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1544,10 +1544,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1564,16 +1564,16 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) entry( index = 1204, - label = "CH3CH2NH2_1 + CH3 <=> CH2CH2NH2 + CH4", + label = "CH3CH2NH2_1 + CH3_r3 <=> CH2CH2NH2 + CH4", degeneracy = 3, kinetics = Arrhenius( A = (3.28e-04, 'cm^3/(mol*s)'), @@ -1584,16 +1584,16 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) entry( index = 1205, - label = "CH3CH2NH2_2 + CH3 <=> CH3CHNH2 + CH4", + label = "CH3CH2NH2_2 + CH3_r3 <=> CH3CHNH2 + CH4", degeneracy = 2, kinetics = Arrhenius( A = (2.76e-02, 'cm^3/(mol*s)'), @@ -1604,16 +1604,16 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) entry( index = 1206, - label = "CH3CH2NH2_3 + CH3 <=> CH3CH2NH + CH4", + label = "CH3CH2NH2_3 + CH3_r3 <=> CH3CH2NH + CH4", degeneracy = 2, kinetics = Arrhenius( A = (1.27e-02, 'cm^3/(mol*s)'), @@ -1624,10 +1624,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1644,10 +1644,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1664,10 +1664,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1684,10 +1684,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1773,16 +1773,16 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) entry( index = 1214, - label = "N2H4 + CH3 <=> N2H3 + CH4", + label = "N2H4 + CH3_r3 <=> N2H3 + CH4", degeneracy = 4, kinetics = Arrhenius( A = (1.77e+01, 'cm^3/(mol*s)'), @@ -1793,10 +1793,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1813,10 +1813,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1833,10 +1833,10 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) @@ -1853,16 +1853,16 @@ Tmax = (2000, 'K'), ), rank = 3, - shortDesc = u"""CBS-QB3""", + shortDesc = u"""Training reaction from kinetics library: Ethylamine""", longDesc = u""" -Ethylamine paper +CBS-QB3 """, ) entry( index = 1230, - label = "NH + CH4b <=> NH2b + CH3b", + label = "NH + CH4b <=> NH2b + CH3_p1", degeneracy = 1, kinetics = Arrhenius( A = (9e13, 'cm^3/(mol*s)', '*|/', 1.5), @@ -1932,4 +1932,662 @@ J. Phys. Chem. A, 1998, 102 (7), pp 1194–1199 DOI: 10.1021/jp972959n """, -) \ No newline at end of file +) + +entry( + index = 1011, + label = "CH4b + SH <=> CH3_p1 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (7.78e-22, 'cm^3/(mol*s)'), + n = 3.02, + Ea = (66.3, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1012, + label = "C2H6 + SH <=> C2H5b + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (4.37e-22, 'cm^3/(mol*s)'), + n = 3.41, + Ea = (42.2, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1013, + label = "C3H8 + SH <=> CH2CH2CH3 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (8.51e-22, 'cm^3/(mol*s)'), + n = 3.39, + Ea = (43.2, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1014, + label = "C3H8 + SH <=> CH3CHCH3 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (5.25e-18, 'cm^3/(mol*s)'), + n = 1.79, + Ea = (34.6, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1015, + label = "C4H10 + SH <=> CH3CHCH2CH3 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (3.26e-20, 'cm^3/(mol*s)'), + n = 2.53, + Ea = (31.3, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1016, + label = "C2H4 + SH <=> CHCH2 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (2.96e-25, 'cm^3/(mol*s)'), + n = 3.31, + Ea = (81.3, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1017, + label = "C3H6 + SH <=> CH2CHCH2 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (2.00e-24, 'cm^3/(mol*s)'), + n = 3.79, + Ea = (9.9, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1018, + label = "C4H8-4 + SH <=> CH2CHCHCH3 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (2.19e-23, 'cm^3/(mol*s)'), + n = 3.40, + Ea = (0.4, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1019, + label = "C4H8-6 + SH <=> CH2CCH2CH3 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (2.69e-22, 'cm^3/(mol*s)'), + n = 3.32, + Ea = (36.5, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1020, + label = "C3H4-1 + SH <=> CH2CCH + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (2.51e-22, 'cm^3/(mol*s)'), + n = 3.37, + Ea = (30.2, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1022, + label = "C4H6 + SH <=> CHCCHCH3 + H2S", + degeneracy = 1, + kinetics = Arrhenius( + A = (1.10e-22, 'cm^3/(mol*s)'), + n = 3.32, + Ea = (8.01, 'kJ/mol'), + T0 = (1, 'K'), + Tmin = (300, 'K'), + Tmax = (2000, 'K'), + ), + shortDesc = u"""Glarborg CBS-QB3 calc""", + longDesc = +u""" +Rate comes from quantum calculation at CBS-QB3 level +J. Phys. Chem. A 2016, 120, 8941−8948; doi: 10.1021/acs.jpca.6b09357 +""", +) + +entry( + index = 1023, + label = "O_rad + HNCN <=> OH_p23 + NCN", + degeneracy = 4, + kinetics = Arrhenius(A=(1.48e+22, 'cm^3/(mol*s)'), n=-3.37, Ea=(5429, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +k8 in S. Xu, M.C. Lin, Proceedings of the Combustion Institute, 2009, 32, 99-106, doi: 10.1016/j.proci.2008.07.011 +Done at the CCSD(T)/6-311+G(3df,2p)//CCSD/6-311++G(d,p) level of theory +The paper reports on four pathways to get to the same products, but only one is considered hydrogen abstraction. +""", +) + +entry( + index = 1024, + label = "O2 + HNCN <=> HO2 + NCN", + degeneracy = 2, + kinetics = Arrhenius(A=(1.61e+08, 'cm^3/(mol*s)'), n=1.25, Ea=(24443, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +k13 in S. Xu, M.C. Lin, Proceedings of the Combustion Institute, 2009, 32, 99-106, doi: 10.1016/j.proci.2008.07.011 +Done at the CCSD(T)/6-311+G(3df,2p)//CCSD/6-311++G(d,p) level of theory +The paper reports on two pathways to get to the same products, but only one is considered hydrogen abstraction. +""", +) + +entry( + index = 1025, + label = "N + H2 <=> NH_p + H_p", + degeneracy = 1, + kinetics = Arrhenius(A=(1.60e+14, 'cm^3/(mol*s)'), n=0, Ea=(25138, 'cal/mol'), T0=(1, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +D.F. Davidson, R.K. Hanson, Int. J. Chem. Kin., 1990, 22(8), 843–861, doi: 10.1002/kin.550220805 +""", +) + +entry( + index = 1026, + label = "N2H4 + NO <=> N2H3 + HNO_p", + degeneracy = 1, + kinetics = Arrhenius(A=(6.44e+01, 'cm^3/(mol*s)'), n=3.16, Ea=(30488, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (2000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +P. Raghunath, Y.H. Lin, M.C. Lin, Computational and Theoretical Chemistry, 2014, 1046, 73-80, doi: 10.1016/j.comptc.2014.07.011 +calculations done at the CCSD(T)/CBS//CCSD level of theoty, +and the moment of inertia and harmonic vibrational frequencies were obtained by the CCSD/6-31G(d,p) level +""", +) + +entry( + index = 1027, + label = "HNCN + OH <=> H2O_p + NCN", + degeneracy = 1, + kinetics = Arrhenius(A=(1.04e+05, 'cm^3/(mol*s)'), n=2.48, Ea=(-1886, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +k7 in: S. Xu, M.C. Lin, J. Phys. Chem. A, 2007, 111, 6730-6740, doi: 10.1021/jp069038+ +Done at the CCSD(T)/6-311+G(3df,2p)//B3LYP/6-311+G(3df,2p) level of theory +""", +) + +entry( + index = 1028, + label = "N2H4 + NO2 <=> N2H3 + HONO_p", + degeneracy = 1, + kinetics = Arrhenius(A=(3.23e+00, 'cm^3/(mol*s)'), n=3.56, Ea=(763, 'cal/mol'), T0=(1, 'K'), Tmin = (250, 'K'), Tmax = (2500, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +P. Raghunath, N.T. Nghia, M.C. Lin, Advances in Quantum Chemistry, 2014, 69, 253-301, doi: 10.1016/B978-0-12-800345-9.00007-6 +p. 265 +calculations done at the G2M(CC2)//B3LYP/6-311þþG(3df,2p) level of theoty +""", +) + +entry( + index = 1029, + label = "N2H4 + NO3 <=> N2H3 + HNO3", + degeneracy = 1, + kinetics = Arrhenius(A=(1.28e+04, 'cm^3/(mol*s)'), n=2.53, Ea=(-2947, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +P. Raghunath, N.T. Nghia, M.C. Lin, Advances in Quantum Chemistry, 2014, 69, 253-301, doi: 10.1016/B978-0-12-800345-9.00007-6 +p. 269 +CCSD(T)//BHandHLYP/6-311þþG(3df,2p) level of theoty +Pressure independent at least up to 100 atm +""", +) + +entry( + index = 1030, + label = "NH3_r + NO <=> NH2_p + HNO_p", + degeneracy = 1, + kinetics = Arrhenius(A=(1.04e+07, 'cm^3/(mol*s)'), n=1.73, Ea=(56544, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (5000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +A.M. Mebel, E.W.G. Diau, M.C. Lin, K.Morokuma, J. Phys. Chem., 1996, 100, 7517-7525, doi: 10.1021/jp953644f +k1 on p. 7519 +calculations done at the UMP2/6-311G-(d,p)//UMP2/6-311G(d,p) level of theory +""", +) + +entry( + index = 1031, + label = "NH2 + H2 <=> NH3 + H_p", + degeneracy = 1, + kinetics = Arrhenius(A=(3.23e+05, 'cm^3/(mol*s)'), n=2.23, Ea=(7168, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (5000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +A.M. Mebel, L.V. Moskaleva, M.C. Lin, J. Molec. Struc. (Theochem), 1999, 461-462, 223-238, doi: 10.1016/S0166-1280(98)00423-0 +k1_theo on p. 229 +calculations done at the G2M//B3LYP/6-311G(d,p) level of theory +""", +) + +entry( + index = 1032, + label = "NH2 + CH4b <=> NH3 + CH3_p1", + degeneracy = 1, + kinetics = Arrhenius(A=(1.36e+04, 'cm^3/(mol*s)'), n=2.87, Ea=(10691, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (5000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +A.M. Mebel, L.V. Moskaleva, M.C. Lin, J. Molec. Struc. (Theochem), 1999, 461-462, 223-238, doi: 10.1016/S0166-1280(98)00423-0 +k2 on p. 232 +calculations done at the G2M//B3LYP/6-311G(d,p) level of theory +""", +) + +entry( + index = 1033, + label = "NH2 + H2O <=> NH3 + OH_p1", + degeneracy = 1, + kinetics = Arrhenius(A=(2.62e+13, 'cm^3/(mol*s)'), n=0, Ea=(16846, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (5000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +A.M. Mebel, L.V. Moskaleva, M.C. Lin, J. Molec. Struc. (Theochem), 1999, 461-462, 223-238, doi: 10.1016/S0166-1280(98)00423-0 +k4 on p. 233 +calculations done at the G2M//B3LYP/6-311G(d,p) level of theory +A lower and upper rate limits were given. Here an average rate was taken. +Fitted to a 2 parameter Arrhenius with a coefficient of determination of 0.9943 +""", +) + +entry( + index = 1036, + label = "H2S_r + H <=> SH_p1 + H2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(3.5e+07, 'cm^3/(mol*s)'), n=1.94, Ea=(904, 'cal/mol'), T0=(1, 'K'), Tmin = (190, 'K'), Tmax = (2237, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +J. Peng, X. Hu, P. Marshall, J. Phys. Chem. A, 1999, 103, 5307-5311, doi: 10.1021/jp984242l +Combined experimental (298-598 K) and computational calculation at the QCISD(T)/6-311+G(3df,2p) level +(also available from D. Woiki, P. Roth, Israel Journal of Chemistry, 1996, 36(3), 279-283, doi: 10.1002/ijch.199600039) +""", +) + +entry( + index = 1037, + label = "H2S_r + S_rad <=> SH_p1 + SH", + degeneracy = 1, + kinetics = Arrhenius(A=(3.7e+06, 'cm^3/(mol*s)'), n=2.297, Ea=(9010, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +C.R. Zhou, K. Sendt, B.S. Haynes, J. Phys. Chem. A, 2008, 112, 3239-3247, doi: 10.1021/jp710488d +calculations done at the MRCI/aug-cc-pV(Q+d)Z//MRCI/aug-cc-pVTZ level of theory +""", +) + +entry( + index = 1038, + label = "H2 + S_rad <=> SH + H_p", + degeneracy = 1, + kinetics = Arrhenius(A=(1.58e+14, 'cm^3/(mol*s)'), n=0, Ea=(19700, 'cal/mol'), T0=(1, 'K'), Tmin = (2740, 'K'), Tmax = (3570, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +Shock Tube +H. Shiina, M. Oya, K. Yamashita, A. Miyoshi, H. Matsui, J. Phys. Chem., 1996, 100(6), 2136–2140, doi: 10.1021/jp952472j +""", +) + +entry( + index = 1039, + label = "CH4b + S_rad <=> SH + CH3_p1", + degeneracy = 1, + kinetics = Arrhenius(A=(2.04e+14, 'cm^3/(mol*s)'), n=0, Ea=(19910, 'cal/mol'), T0=(1, 'K'), Tmin = (830, 'K'), Tmax = (2500, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +K. Tsuchiya, K. Yamashita, A. Miyoshi, H. Matsui, J. Phys. Chem., 1996, 100(43), 17202–17206, doi: 10.1021/jp961252i +Shock Tube +T > 830 K +""", +) + +entry( + index = 1040, + label = "C2H6 + S_rad <=> SH + C2H5b", + degeneracy = 1, + kinetics = Arrhenius(A=(1.23e+14, 'cm^3/(mol*s)'), n=0, Ea=(14750, 'cal/mol'), T0=(1, 'K'), Tmin = (830, 'K'), Tmax = (2500, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +K. Tsuchiya, K. Yamashita, A. Miyoshi, H. Matsui, J. Phys. Chem., 1996, 100(43), 17202–17206, doi: 10.1021/jp961252i +Shock Tube +T > 830 K +""", +) + +entry( + index = 1044, + label = "HSSH_r12 + H <=> HSS_p1 + H2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(9.56e+00, 'cm^3/(mol*s)'), n=3.370, Ea=(-1672, 'cal/mol'), T0=(1, 'K'), Tmin = (873, 'K'), Tmax = (1423, 'K')), + rank = 3, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +K. Sendt, M. Jazbec, B.S. Haynes, Proceedings of the Combustion Institute, 2002, 29, 2439-2446, doi: 10.1016/S1540-7489(02)80297-8 +TST +""", +) + +entry( + index = 1045, + label = "HSSH_r12 + SH <=> H2S + HSS_p1", + degeneracy = 1, + kinetics = Arrhenius(A=(6.40e+03, 'cm^3/(mol*s)'), n=2.980, Ea=(-1480, 'cal/mol'), T0=(1, 'K'), Tmin = (873, 'K'), Tmax = (1423, 'K')), + rank = 3, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +K. Sendt, M. Jazbec, B.S. Haynes, Proceedings of the Combustion Institute, 2002, 29, 2439-2446, doi: 10.1016/S1540-7489(02)80297-8 +TST +""", +) + +entry( + index = 1046, + label = "HSSH_r12 + S_rad <=> HSS_p1 + SH", + degeneracy = 1, + kinetics = Arrhenius(A=(6.40e+03, 'cm^3/(mol*s)'), n=2.980, Ea=(-1480, 'cal/mol'), T0=(1, 'K'), Tmin = (873, 'K'), Tmax = (1423, 'K')), + rank = 3, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +K. Sendt, M. Jazbec, B.S. Haynes, Proceedings of the Combustion Institute, 2002, 29, 2439-2446, doi: 10.1016/S1540-7489(02)80297-8 +TST +""", +) + +entry( + index = 1047, + label = "HONO_r + H <=> H2_p + NO2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(2.01e+08, 'cm^3/(mol*s)'), n=1.55, Ea=(6614, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3500, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +C.C. Hsu, M.C. Lin, A.M. Mebel, C.F. Melius, J. Phys. Chem. A, 1997, 101(1), 60–66, doi: 10.1021/jp962286t +G2 and BAC-MP4 +""", +) + +entry( + index = 1048, + label = "HNO_r + H <=> NO_p + H2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(4.46e+11, 'cm^3/(mol*s)'), n=0.720, Ea=(655, 'cal/mol'), T0=(1, 'K'), Tmin = (200, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +M.R. Soto, M. Page, J. Chem. Phys., 1992, 97, 7287, doi: 10.1063/1.463501 +calculations done at the CASSCF//(CASSCF and CISD) levels of theory +""", +) + +entry( + index = 1049, + label = "HNO3_r + H <=> H2_p + NO3_p", + degeneracy = 1, + kinetics = Arrhenius(A=(5.56e+08, 'cm^3/(mol*s)'), n=1.53, Ea=(16400, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +J.W. Boughton, S. Kristyan, M.C. Lin, Chemical Physics, 1997, 214(2-3), 219-227, doi: 10.1016/S0301-0104(96)00313-8 +CTST +""", +) + +entry( + index = 1050, + label = "HCO_r3 + HNO_r <=> CH2O_p + NO_p", + degeneracy = 1, + kinetics = Arrhenius(A=(5.83e-01, 'cm^3/(mol*s)'), n=3.84, Ea=(115, 'cal/mol'), T0=(1, 'K'), Tmin = (300, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +Z.F. Xu, M.C. Lin, Int. J. Chem. Kin., 2004, 36(4), 205-215, doi: 10.1002/kin.10178 +calculations done at the G2M//BH&HLYP/6-311G(d, p) level of theory +""", +) + +entry( + index = 1051, + label = "CH2O + NO2 <=> CHO_p1 + HONO_p", + degeneracy = 3, + kinetics = Arrhenius(A=(1.42e-7, 'cm^3/(mol*s)'), n=5.64, Ea=(9221, 'cal/mol'), T0=(1, 'K'), Tmin = (200, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +Z.F. Xu, M.C. Lin, Int. J. Chem. Kin., 2003, 35(5), 184-190, doi: 10.1002/kin.10115 +calculations done at the G2M//B3LYP/6−311+G(d,p) and G2M//MPW1PW91/6−311+G(3df,2p) levels of theory +* There are two other pathways for the formation of these products, this is the fastest one. k_tot was also given in the paper. +""", +) + +entry( + index = 1052, + label = "HNO3_r + OH <=> H2O_p + NO3_p", + degeneracy = 1, + kinetics = Arrhenius(A=(8.73e+00, 'cm^3/(mol*s)'), n=3.50, Ea=(-1667, 'cal/mol'), T0=(1, 'K'), Tmin = (750, 'K'), Tmax = (1500, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +W.S. Xia, M.C. Lin, J. Chem. Phys., 2001, 114, 4522-4532, doi: 10.1063/1.1337061 +calculations done at the B3LYP/6-311G(d,p)//B3LYP/6-311G(d,p) level of theory +""", +) + +entry( + index = 1053, + label = "HCN_r + O_rad <=> CN_p + OH_p23", + degeneracy = 1, + kinetics = Arrhenius(A=(2.0e+08, 'cm^3/(mol*s)'), n=1.47, Ea=(7550, 'cal/mol'), T0=(1, 'K'), Tmin = (500, 'K'), Tmax = (2500, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +W. Tsang, J.T. Herron, Journal of Physical and Chemical Reference Data, 1991, 20, 609, doi: 10.1063/1.555890 +Review and reccomendation, based on 5 different experimental studies +""", +) + +entry( + index = 1054, + label = "HCN_r + H <=> CN_p + H2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(3.8e+14, 'cm^3/(mol*s)'), n=0, Ea=(24600, 'cal/mol'), T0=(1, 'K'), Tmin = (500, 'K'), Tmax = (2500, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +W. Tsang, J.T. Herron, Journal of Physical and Chemical Reference Data, 1991, 20, 609, doi: 10.1063/1.555890 +Review and reccomendation, based on experimental studies +""", +) + +entry( + index = 1055, + label = "HCN_r + OH <=> CN_p + H2O_p", + degeneracy = 1, + kinetics = Arrhenius(A=(3.8e+14, 'cm^3/(mol*s)'), n=0, Ea=(24600, 'cal/mol'), T0=(1, 'K'), Tmin = (298, 'K'), Tmax = (2840, 'K')), + rank = 1, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +W. Tsang, J.T. Herron, Journal of Physical and Chemical Reference Data, 1991, 20, 609, doi: 10.1063/1.555890 +Review and reccomendation, based on experimental studies +""", +) + +entry( + index = 1056, + label = "CH3SH_r1 + H <=> CH3S_p + H2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(1.39e+08, 'cm^3/(mol*s)'), n=1.729, Ea=(986, 'cal/mol'), T0=(1, 'K'), Tmin = (250, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +WK.E. Kerr, I.M. Alecu, K.M. Thompson, Y. Gao, P. Marshall, J. Phys. CHem. A, 2015, 119, 7352-7360, doi: 10.1021/jp512966a +Table 5, R1 +calculations done at the QCISD/6-311G(d,p) level +""", +) + +entry( + index = 1057, + label = "CH3SH_r2 + H <=> CH2SH_p + H2_p", + degeneracy = 1, + kinetics = Arrhenius(A=(4.16e+03, 'cm^3/(mol*s)'), n=2.925, Ea=(4747, 'cal/mol'), T0=(1, 'K'), Tmin = (250, 'K'), Tmax = (3000, 'K')), + rank = 2, + shortDesc = u"""Training reaction from kinetics library: SOxNOx""", + longDesc = +u""" +WK.E. Kerr, I.M. Alecu, K.M. Thompson, Y. Gao, P. Marshall, J. Phys. CHem. A, 2015, 119, 7352-7360, doi: 10.1021/jp512966a +Table 5, R2 +calculations done at the QCISD/6-311G(d,p) level +""", +) + diff --git a/input/kinetics/families/Oa_R_Recombination/rules.py b/input/kinetics/families/Oa_R_Recombination/rules.py deleted file mode 100644 index 85b5d050d1..0000000000 --- a/input/kinetics/families/Oa_R_Recombination/rules.py +++ /dev/null @@ -1,22 +0,0 @@ -#!/usr/bin/env python -# encoding: utf-8 - -name = "Oa_R_Recombination/rules" -shortDesc = u"" -longDesc = u""" - -""" -entry( - index = 1000, - label = "Y_rad;Oa", - kinetics = ArrheniusEP( - A = (1e+13, 'cm^3/(mol*s)'), - n = 0, - alpha = 0, - E0 = (0, 'kcal/mol'), - Tmin = (300, 'K'), - Tmax = (1500, 'K'), - ), - rank = 2, -) - diff --git a/input/kinetics/families/Oa_R_Recombination/training/dictionary.txt b/input/kinetics/families/Oa_R_Recombination/training/dictionary.txt deleted file mode 100644 index e69de29bb2..0000000000 diff --git a/input/kinetics/families/Oa_R_Recombination/training/reactions.py b/input/kinetics/families/Oa_R_Recombination/training/reactions.py deleted file mode 100644 index 0b73578e1c..0000000000 --- a/input/kinetics/families/Oa_R_Recombination/training/reactions.py +++ /dev/null @@ -1,9 +0,0 @@ -#!/usr/bin/env python -# encoding: utf-8 - -name = "Oa_R_Recombination/training" -shortDesc = u"Kinetics used to train group additivity values" -longDesc = u""" -Put kinetic parameters for reactions to use as a training set for fitting -group additivity values in this file. -""" diff --git a/input/kinetics/families/recommended.py b/input/kinetics/families/recommended.py index a5b84ee997..4ad3dc1321 100644 --- a/input/kinetics/families/recommended.py +++ b/input/kinetics/families/recommended.py @@ -20,6 +20,7 @@ '2+2_cycloaddition_Cd':True, 'Birad_recombination':True, 'CO_Disproportionation':True, +'Birad_R_Recombination':True, 'Cyclic_Ether_Formation':True, 'Diels_alder_addition':True, 'Disproportionation':True, @@ -35,7 +36,6 @@ 'Intra_R_Add_Exocyclic':True, 'Korcek_step1':False, 'Korcek_step2':False, -'Oa_R_Recombination':True, 'R_Addition_COm':True, 'R_Addition_CSm':False, 'R_Addition_MultipleBond':True, diff --git a/input/kinetics/libraries/Sulfur/DMDS/dictionary.txt b/input/kinetics/libraries/Sulfur/DMDS/dictionary.txt index b0198ec5e7..a669b8cee4 100644 --- a/input/kinetics/libraries/Sulfur/DMDS/dictionary.txt +++ b/input/kinetics/libraries/Sulfur/DMDS/dictionary.txt @@ -25,7 +25,7 @@ multiplicity 3 1 S u1 p2 c0 {2,S} 2 S u1 p2 c0 {1,S} -SJJ +Sa 1 S u0 p3 c0 SH diff --git a/input/kinetics/libraries/Sulfur/DMDS/reactions.py b/input/kinetics/libraries/Sulfur/DMDS/reactions.py index 6a3828a51d..73c71fdc82 100644 --- a/input/kinetics/libraries/Sulfur/DMDS/reactions.py +++ b/input/kinetics/libraries/Sulfur/DMDS/reactions.py @@ -34,7 +34,7 @@ entry( index = 3, - label = "SJJ + SJJ <=> S2", + label = "Sa + Sa <=> S2", degeneracy = 1, kinetics = Arrhenius( A = (1.6e+11, 'cm^3/(mol*s)'), diff --git a/input/thermo/groups/gauche.py b/input/thermo/groups/gauche.py deleted file mode 100644 index a1dcf70c32..0000000000 --- a/input/thermo/groups/gauche.py +++ /dev/null @@ -1,3238 +0,0 @@ -#!/usr/bin/env python -# encoding: utf-8 - -name = "Gauche Interaction Corrections" -shortDesc = u"" -longDesc = u""" - -""" -entry( - index = 0, - label = "CsOsCdSs", - group = -""" -1 * [Cs,Os,Cd,Ss] u0 -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 1, - label = "Cs(RRRR)", - group = -""" -1 * Cs u0 -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 2, - label = "Cs(CsRRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 3, - label = "Cs(Cs(CsRR)RRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 4, - label = "Cs(Cs(CsCsR)RRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 5, - label = "Cs(Cs(CsCsCs)RRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 6, - label = "Cs(CsCsRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} -3 Cs u0 {1,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 7, - label = "Cs(Cs(CsRR)CsRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 8, - label = "Cs(Cs(CsRR)Cs(CsRR)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 9, - label = "Cs(Cs(CsCsR)CsRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 10, - label = "Cs(Cs(CsCsR)Cs(CsRR)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 11, - label = "Cs(Cs(CsCsR)Cs(CsCsR)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 12, - label = "Cs(Cs(CsCsCs)CsRR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 13, - label = "Cs(Cs(CsCsCs)Cs(CsRR)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 14, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 15, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 16, - label = "Cs(CsCsCsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} -3 Cs u0 {1,S} -4 Cs u0 {1,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 17, - label = "Cs(Cs(CsRR)CsCsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 18, - label = "Cs(Cs(CsRR)Cs(CsRR)CsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 19, - label = "Cs(Cs(CsRR)Cs(CsRR)Cs(CsRR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 20, - label = "Cs(Cs(CsCsR)CsCsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 21, - label = "Cs(Cs(CsCsR)Cs(CsRR)CsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 22, - label = "Cs(Cs(CsCsR)Cs(CsRR)Cs(CsRR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 23, - label = "Cs(Cs(CsCsR)Cs(CsCsR)CsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 24, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsRR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 25, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 26, - label = "Cs(Cs(CsCsCs)CsCsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 27, - label = "Cs(Cs(CsCsCs)Cs(CsRR)CsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 28, - label = "Cs(Cs(CsCsCs)Cs(CsRR)Cs(CsRR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 29, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)CsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 30, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 31, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 32, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)CsR)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 33, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 34, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 35, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)R)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 Cs u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 36, - label = "Cs(CsCsCsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} -3 Cs u0 {1,S} -4 Cs u0 {1,S} -5 Cs u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 37, - label = "Cs(Cs(CsRR)CsCsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 38, - label = "Cs(Cs(CsRR)Cs(CsRR)CsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 39, - label = "Cs(Cs(CsRR)Cs(CsRR)Cs(CsRR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 40, - label = "Cs(Cs(CsRR)Cs(CsRR)Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 41, - label = "Cs(Cs(CsCsR)CsCsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 42, - label = "Cs(Cs(CsCsR)Cs(CsRR)CsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 43, - label = "Cs(Cs(CsCsR)Cs(CsRR)Cs(CsRR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 44, - label = "Cs(Cs(CsCsR)Cs(CsRR)Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 45, - label = "Cs(Cs(CsCsR)Cs(CsCsR)CsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 46, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsRR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 47, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 48, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 49, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (5.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 50, - label = "Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)Cs(CsCsR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 Cs u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (6.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 51, - label = "Cs(Cs(CsCsCs)CsCsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 52, - label = "Cs(Cs(CsCsCs)Cs(CsRR)CsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 53, - label = "Cs(Cs(CsCsCs)Cs(CsRR)Cs(CsRR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 54, - label = "Cs(Cs(CsCsCs)Cs(CsRR)Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 55, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)CsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 56, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 57, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (5.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 58, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (5.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 59, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (6.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 60, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)Cs(CsCsR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 Cs u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (7.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 61, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)CsCs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (4.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 62, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (5.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 63, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (6.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 64, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (6.4,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 65, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (7.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 66, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -15 Cs u0 {5,S} -16 Cs u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 67, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs)", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 Cs u0 {4,S} -15 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (7.2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 68, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 Cs u0 {4,S} -15 Cs u0 {5,S} -16 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 69, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 Cs u0 {4,S} -15 Cs u0 {5,S} -16 Cs u0 {5,S} -17 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (8.8,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 70, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs))", - group = -""" -1 * Cs u0 {2,S} {3,S} {4,S} {5,S} -2 Cs u0 {1,S} {6,S} {7,S} {8,S} -3 Cs u0 {1,S} {9,S} {10,S} {11,S} -4 Cs u0 {1,S} {12,S} {13,S} {14,S} -5 Cs u0 {1,S} {15,S} {16,S} {17,S} -6 Cs u0 {2,S} -7 Cs u0 {2,S} -8 Cs u0 {2,S} -9 Cs u0 {3,S} -10 Cs u0 {3,S} -11 Cs u0 {3,S} -12 Cs u0 {4,S} -13 Cs u0 {4,S} -14 Cs u0 {4,S} -15 Cs u0 {5,S} -16 Cs u0 {5,S} -17 Cs u0 {5,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (9.6,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 71, - label = "Os(RR)", - group = -""" -1 * Os u0 -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 72, - label = "Os(CsR)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 73, - label = "Os(Cs(CsRR)R)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 Cs u0 {2,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 74, - label = "Os(Cs(CsCsR)R)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 75, - label = "Os(Cs(CsCsCs)R)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 76, - label = "Os(CsCs)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} -3 Cs u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 77, - label = "Os(Cs(CsRR)Cs)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 78, - label = "Os(Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -7 Cs u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 79, - label = "Os(Cs(CsCsR)Cs)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.5,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 80, - label = "Os(Cs(CsCsR)Cs(CsRR))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -7 Cs u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0.5,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 81, - label = "Os(Cs(CsCsR)Cs(CsCsR))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 82, - label = "Os(Cs(CsCsCs)Cs)", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 83, - label = "Os(Cs(CsCsCs)Cs(CsRR))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 84, - label = "Os(Cs(CsCsCs)Cs(CsCsR))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.5,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 85, - label = "Os(Cs(CsCsCs)Cs(CsCsCs))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -9 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 86, - label = "Cd(CsCs)", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} -4 Cs u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 87, - label = "Cd(Cs(CsRR)Cs)", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 88, - label = "Cd(Cs(CsRR)Cs(CsRR))", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 Cs u0 {4,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 89, - label = "Cd(Cs(CsCsR)Cs)", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 90, - label = "Cd(Cs(CsCsR)Cs(CsRR))", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 Cs u0 {4,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 91, - label = "Cd(Cs(CsCsR)Cs(CsCsR))", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} -8 Cs u0 {4,S} -9 Cs u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 92, - label = "Cd(Cs(CsCsCs)Cs)", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 Cs u0 {3,S} -8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 93, - label = "Cd(Cs(CsCsCs)Cs(CsRR))", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 Cs u0 {3,S} -8 Cs u0 {4,S} -9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 94, - label = "Cd(Cs(CsCsCs)Cs(CsCsR))", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 Cs u0 {3,S} -8 Cs u0 {4,S} -9 Cs u0 {4,S} -10 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 95, - label = "Cd(Cs(CsCsCs)Cs(CsCsCs))", - group = -""" -1 * Cd u0 {2,D} {3,S} {4,S} -2 Cd u0 {1,D} -3 Cs u0 {1,S} {5,S} {6,S} {7,S} -4 Cs u0 {1,S} {8,S} {9,S} {10,S} -5 Cs u0 {3,S} -6 Cs u0 {3,S} -7 Cs u0 {3,S} -8 Cs u0 {4,S} -9 Cs u0 {4,S} -10 Cs u0 {4,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (2,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 96, - label = "Ss(RR)", - group = -""" -1 * Ss u0 -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 97, - label = "Ss(CsR)", - group = -""" -1 * Ss u0 {2,S} {3,S} -2 Cs u0 {1,S} -3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 98, - label = "Ss(CsH)", - group = -""" -1 * Ss u0 {2,S} {3,S} -2 Cs u0 {1,S} -3 H u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 99, - label = "Ss(Cs(CsHH)H)", - group = -""" -1 * Ss u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 H u0 {1,S} -4 H u0 {2,S} -5 H u0 {2,S} -6 Cs u0 {2,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0.33,0.62,0.67,0.59,0.38,0.21,-0.01],'cal/(mol*K)'), - H298 = (-0.97,'kcal/mol'), - S298 = (-1.01,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 100, - label = "Ss(CsCs)", - group = -""" -1 * Ss u0 {2,S} {3,S} -2 Cs u0 {1,S} -3 Cs u0 {1,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -tree( -""" -L1: CsOsCdSs - L2: Cs(RRRR) - L3: Cs(CsRRR) - L4: Cs(Cs(CsRR)RRR) - L4: Cs(Cs(CsCsR)RRR) - L4: Cs(Cs(CsCsCs)RRR) - L3: Cs(CsCsRR) - L4: Cs(Cs(CsRR)CsRR) - L4: Cs(Cs(CsRR)Cs(CsRR)RR) - L4: Cs(Cs(CsCsR)CsRR) - L4: Cs(Cs(CsCsR)Cs(CsRR)RR) - L4: Cs(Cs(CsCsR)Cs(CsCsR)RR) - L4: Cs(Cs(CsCsCs)CsRR) - L4: Cs(Cs(CsCsCs)Cs(CsRR)RR) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)RR) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)RR) - L3: Cs(CsCsCsR) - L4: Cs(Cs(CsRR)CsCsR) - L4: Cs(Cs(CsRR)Cs(CsRR)CsR) - L4: Cs(Cs(CsRR)Cs(CsRR)Cs(CsRR)R) - L4: Cs(Cs(CsCsR)CsCsR) - L4: Cs(Cs(CsCsR)Cs(CsRR)CsR) - L4: Cs(Cs(CsCsR)Cs(CsRR)Cs(CsRR)R) - L4: Cs(Cs(CsCsR)Cs(CsCsR)CsR) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsRR)R) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)R) - L4: Cs(Cs(CsCsCs)CsCsR) - L4: Cs(Cs(CsCsCs)Cs(CsRR)CsR) - L4: Cs(Cs(CsCsCs)Cs(CsRR)Cs(CsRR)R) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)CsR) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)R) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)R) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)CsR) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)R) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)R) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)R) - L3: Cs(CsCsCsCs) - L4: Cs(Cs(CsRR)CsCsCs) - L4: Cs(Cs(CsRR)Cs(CsRR)CsCs) - L4: Cs(Cs(CsRR)Cs(CsRR)Cs(CsRR)Cs) - L4: Cs(Cs(CsRR)Cs(CsRR)Cs(CsRR)Cs(CsRR)) - L4: Cs(Cs(CsCsR)CsCsCs) - L4: Cs(Cs(CsCsR)Cs(CsRR)CsCs) - L4: Cs(Cs(CsCsR)Cs(CsRR)Cs(CsRR)Cs) - L4: Cs(Cs(CsCsR)Cs(CsRR)Cs(CsRR)Cs(CsRR)) - L4: Cs(Cs(CsCsR)Cs(CsCsR)CsCs) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsRR)Cs) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsRR)Cs(CsRR)) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)Cs) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)Cs(CsRR)) - L4: Cs(Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)) - L4: Cs(Cs(CsCsCs)CsCsCs) - L4: Cs(Cs(CsCsCs)Cs(CsRR)CsCs) - L4: Cs(Cs(CsCsCs)Cs(CsRR)Cs(CsRR)Cs) - L4: Cs(Cs(CsCsCs)Cs(CsRR)Cs(CsRR)Cs(CsRR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)CsCs) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)Cs) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)Cs(CsRR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)Cs) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)Cs(CsRR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)Cs(CsCsR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)CsCs) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)Cs) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)Cs(CsRR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)Cs) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)Cs(CsRR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)Cs(CsCsR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs(CsRR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsR)) - L4: Cs(Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)Cs(CsCsCs)) - L2: Os(RR) - L3: Os(CsR) - L4: Os(Cs(CsRR)R) - L4: Os(Cs(CsCsR)R) - L4: Os(Cs(CsCsCs)R) - L3: Os(CsCs) - L4: Os(Cs(CsRR)Cs) - L4: Os(Cs(CsRR)Cs(CsRR)) - L4: Os(Cs(CsCsR)Cs) - L4: Os(Cs(CsCsR)Cs(CsRR)) - L4: Os(Cs(CsCsR)Cs(CsCsR)) - L4: Os(Cs(CsCsCs)Cs) - L4: Os(Cs(CsCsCs)Cs(CsRR)) - L4: Os(Cs(CsCsCs)Cs(CsCsR)) - L4: Os(Cs(CsCsCs)Cs(CsCsCs)) - L2: Cd(CsCs) - L3: Cd(Cs(CsRR)Cs) - L3: Cd(Cs(CsRR)Cs(CsRR)) - L3: Cd(Cs(CsCsR)Cs) - L3: Cd(Cs(CsCsR)Cs(CsRR)) - L3: Cd(Cs(CsCsR)Cs(CsCsR)) - L3: Cd(Cs(CsCsCs)Cs) - L3: Cd(Cs(CsCsCs)Cs(CsRR)) - L3: Cd(Cs(CsCsCs)Cs(CsCsR)) - L3: Cd(Cs(CsCsCs)Cs(CsCsCs)) - L2: Ss(RR) - L3: Ss(CsR) - L4: Ss(CsH) - L5: Ss(Cs(CsHH)H) - L3: Ss(CsCs) -""" -) - diff --git a/input/thermo/groups/int15.py b/input/thermo/groups/int15.py deleted file mode 100644 index 60fde4cfb1..0000000000 --- a/input/thermo/groups/int15.py +++ /dev/null @@ -1,212 +0,0 @@ -#!/usr/bin/env python -# encoding: utf-8 - -name = "1,5-Interaction Corrections" -shortDesc = u"" -longDesc = u""" - -""" -entry( - index = 0, - label = "CsOsSs", - group = -""" -1 * [Cs,Os,Ss] u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (0,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 1, - label = "Cs(Cs(CsCsCs)Cs(CsCsR)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (1.5,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 2, - label = "Cs(Cs(CsCsCs)Cs(CsCsCs)RR)", - group = -""" -1 * Cs u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -9 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 3, - label = "Os(Cs(CsCsCs)Cs(CsCsR))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (3.5,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 4, - label = "Os(Cs(CsCsCs)Cs(CsCsCs))", - group = -""" -1 * Os u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -9 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), - H298 = (7,'kcal/mol'), - S298 = (0,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 5, - label = "Ss(Cs(CsCsCs)Cs(CsCsR))", - group = -""" -1 * Ss u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([-0.1,-0.2,-0.1,0,0.2,0.1,-0.2],'cal/(mol*K)'), - H298 = (3.1,'kcal/mol'), - S298 = (-1.9,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -entry( - index = 6, - label = "Ss(Cs(CsCsCs)Cs(CsCsCs))", - group = -""" -1 * Ss u0 {2,S} {3,S} -2 Cs u0 {1,S} {4,S} {5,S} {6,S} -3 Cs u0 {1,S} {7,S} {8,S} {9,S} -4 Cs u0 {2,S} -5 Cs u0 {2,S} -6 Cs u0 {2,S} -7 Cs u0 {3,S} -8 Cs u0 {3,S} -9 Cs u0 {3,S} -""", - thermo = ThermoData( - Tdata = ([300,400,500,600,800,1000,1500],'K'), - Cpdata = ([-1,-1,-0.8,-0.7,-0.6,-0.7,-1],'cal/(mol*K)'), - H298 = (5.7,'kcal/mol'), - S298 = (-1.7,'cal/(mol*K)'), - ), - shortDesc = u"""""", - longDesc = -u""" - -""", -) - -tree( -""" -L1: CsOsSs - L2: Cs(Cs(CsCsCs)Cs(CsCsR)RR) - L3: Cs(Cs(CsCsCs)Cs(CsCsCs)RR) - L2: Os(Cs(CsCsCs)Cs(CsCsR)) - L3: Os(Cs(CsCsCs)Cs(CsCsCs)) - L2: Ss(Cs(CsCsCs)Cs(CsCsR)) - L3: Ss(Cs(CsCsCs)Cs(CsCsCs)) -""" -) - diff --git a/input/thermo/groups/longDistanceInteraction_cyclic.py b/input/thermo/groups/longDistanceInteraction_cyclic.py new file mode 100644 index 0000000000..48284b7411 --- /dev/null +++ b/input/thermo/groups/longDistanceInteraction_cyclic.py @@ -0,0 +1,2153 @@ +#!/usr/bin/env python +# encoding: utf-8 + +name = "Long distance interaction correction for cyclic molecule" +shortDesc = u"" +longDesc = u""" +Designed to account for the long distance interaction for cyclic molecule. +Currently we only have the data for aromatic ortho/meta/para corrections. +Watch out: if the groups on the two labeled atoms are identical, it's value should be halved because it'll be counted twice. + For example, for the interaction of ortho OH and OH, which is labeled as 'o_OH_OH' in this database, + it'll be counted in both {'*1': atom1, '*2'atom2} and {'*2': atom1, '*1'atom2}. + It should be claimed in the 'longDesc' if a entry was halved. + +Source: +For aromatic molecule: [1] Ince et al., AIChE 2015, DOI 10.1002/aic.15008 +For aromatic radical: [2] Ince et al., AIChE 2016, DOI 10.1002/aic.15588 + +Jan-23-2017 PZ +""" + +entry( + index = 0, + label = "R", + group = +""" +1 *1 R u0 +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""ROOT""", + longDesc = +u""" + +""", +) + +entry( + index = 25, + label = "aromatic-ortho", + group = +""" +1 *1 Cb u0 {2,B} +2 *2 Cb u0 {1,B} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""Aromatics NNI correction for ortho position.""", + longDesc = +u""" + +""", +) + +entry( + index = 2, + label = "o_OH_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 O u0 {1,S} {4,S} +4 H u0 {3,S} +5 C u0 {2,S} {6,S} {7,D} +6 H u0 {5,S} +7 O u0 {5,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-2.49, -2.15, -1.77, -1.43, -0.81, -0.33, 0.43],'cal/(mol*K)'), + H298 = (-6.55,'kcal/mol'), + S298 = (-5.09,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 3, + label = "o_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 O u0 {3,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 3, + label = "o_CHO_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 C u0 {1,S} {4,S} {8,D} +4 H u0 {3,S} +5 C u0 {2,S} {6,S} {7,D} +6 H u0 {5,S} +7 O u0 {5,D} +8 O u0 {3,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.20, 0.20, 0.19, 0.17, 0.05, -0.10, -0.30],'cal/(mol*K)'), + H298 = (2.52,'kcal/mol'), + S298 = (0.76,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 4, + label = "o_MeO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 O u0 {1,S} {4,S} +4 C u0 {3,S} {5,S} {6,S} {7,S} +5 H u0 {4,S} +6 H u0 {4,S} +7 H u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 4, + label = "o_MeO_MeO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {8,S} +3 O u0 {1,S} {4,S} +4 C u0 {3,S} {5,S} {6,S} {7,S} +5 H u0 {4,S} +6 H u0 {4,S} +7 H u0 {4,S} +8 O u0 {2,S} {9,S} +9 C u0 {8,S} {10,S} {11,S} {12,S} +10 H u0 {9,S} +11 H u0 {9,S} +12 H u0 {9,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.00, -0.41, -0.56, -0.60, -0.53, -0.44, -0.26],'cal/(mol*K)'), + H298 = (1.76,'kcal/mol'), + S298 = (0.93,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 5, + label = "o_CHO_vinyl", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 O u0 {3,D} +6 C u0 {2,S} {7,D} {8,S} +7 C u0 {6,D} {9,S} {10,S} +8 H u0 {6,S} +9 H u0 {7,S} +10 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.31, 0.38, 0.50, 0.60, 0.57, 0.43, 0.07],'cal/(mol*K)'), + H298 = (2.84,'kcal/mol'), + S298 = (-0.62,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 6, + label = "o_vinyl", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 C u0 {3,D} {6,S} {7,S} +6 H u0 {5,S} +7 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 6, + label = "o_vinyl_vinyl", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 C u0 {3,D} {11,S} {12,S} +6 C u0 {2,S} {7,D} {8,S} +7 C u0 {6,D} {9,S} {10,S} +8 H u0 {6,S} +9 H u0 {7,S} +10 H u0 {7,S} +11 H u0 {5,S} +12 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.55, 0.38, 0.25, 0.16, 0.02, -0.02, -0.06],'cal/(mol*K)'), + H298 = (0.97,'kcal/mol'), + S298 = (-0.27,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 7, + label = "o_CHO_CH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 O u0 {3,D} +6 C u0 {2,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.96, 0.72, 0.48, 0.26, 0.00, -0.14, -0.22],'cal/(mol*K)'), + H298 = (1.94,'kcal/mol'), + S298 = (-0.57,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 8, + label = "o_CHO_C2H5", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 O u0 {3,D} +6 C u0 {2,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 C u0 {6,S} {10,S} {11,S} {12,S} +10 H u0 {9,S} +11 H u0 {9,S} +12 H u0 {9,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.96, 0.72, 0.48, 0.26, 0.00, -0.14, -0.22],'cal/(mol*K)'), + H298 = (1.94,'kcal/mol'), + S298 = (-0.57,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 9, + label = "o_vinyl_CH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {8,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 C u0 {3,D} {6,S} {7,S} +6 H u0 {5,S} +7 H u0 {5,S} +8 C u0 {2,S} {9,S} {10,S} {11,S} +9 H u0 {8,S} +10 H u0 {8,S} +11 H u0 {8,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([1.36, 1.34, 1.17, 1.00, 0.69, 0.50, 0.24],'cal/(mol*K)'), + H298 = (1.10,'kcal/mol'), + S298 = (-1.36,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 10, + label = "o_vinyl_C2H5", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {8,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 C u0 {3,D} {6,S} {7,S} +6 H u0 {5,S} +7 H u0 {5,S} +8 C u0 {2,S} {9,S} {10,S} {11,S} +9 H u0 {8,S} +10 H u0 {8,S} +11 C u0 {8,S} {12,S} {13,S} {14,S} +12 H u0 {11,S} +13 H u0 {11,S} +14 H u0 {11,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([1.36, 1.34, 1.17, 1.00, 0.69, 0.50, 0.24],'cal/(mol*K)'), + H298 = (1.10,'kcal/mol'), + S298 = (-1.36,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 11, + label = "o_CHO_MeO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u0 {1,S} {4,S} {5,D} +4 H u0 {3,S} +5 O u0 {3,D} +6 O u0 {2,S} {7,S} +7 C u0 {6,S} {8,S} {9,S} {10,S} +8 H u0 {7,S} +9 H u0 {7,S} +10 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.62, 0.07, 0.62, 0.93, 0.98, 0.79, 0.31],'cal/(mol*K)'), + H298 = (1.89,'kcal/mol'), + S298 = (-0.41,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 12, + label = "o_CH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u0 {1,S} {4,S} {5,S} {6,S} +4 H u0 {3,S} +5 H u0 {3,S} +6 H u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 12, + label = "o_CH3_CH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,S} {5,S} {6,S} +4 H u0 {3,S} +5 H u0 {3,S} +6 H u0 {3,S} +7 C u0 {2,S} {8,S} {9,S} {10,S} +8 H u0 {7,S} +9 H u0 {7,S} +10 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.39, 0.35, 0.31, 0.30, 0.27, 0.24, 0.18],'cal/(mol*K)'), + H298 = (0.50,'kcal/mol'), + S298 = (-0.79,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 13, + label = "o_CH3_C2H5", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,S} {5,S} {6,S} +4 H u0 {3,S} +5 H u0 {3,S} +6 H u0 {3,S} +7 C u0 {2,S} {8,S} {9,S} {10,S} +8 H u0 {7,S} +9 H u0 {7,S} +10 C u0 {7,S} {11,S} {12,S} {13,S} +11 H u0 {10,S} +12 H u0 {10,S} +13 H u0 {10,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.79, 0.69, 0.62, 0.60, 0.55, 0.48, 0.36],'cal/(mol*K)'), + H298 = (1.00,'kcal/mol'), + S298 = (-1.58,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 14, + label = "o_C2H5", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u0 {1,S} {4,S} {5,S} {6,S} +4 H u0 {3,S} +5 H u0 {3,S} +6 C u0 {3,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 14, + label = "o_C2H5_C2H5", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,S} {5,S} {6,S} +4 H u0 {3,S} +5 H u0 {3,S} +6 C u0 {3,S} {14,S} {15,S} {16,S} +7 C u0 {2,S} {8,S} {9,S} {10,S} +8 H u0 {7,S} +9 H u0 {7,S} +10 C u0 {7,S} {11,S} {12,S} {13,S} +11 H u0 {10,S} +12 H u0 {10,S} +13 H u0 {10,S} +14 H u0 {6,S} +15 H u0 {6,S} +16 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.39, 0.35, 0.31, 0.30, 0.27, 0.24, 0.18],'cal/(mol*K)'), + H298 = (0.50,'kcal/mol'), + S298 = (-0.79,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 15, + label = "o_OH", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 O u0 {1,S} {4,S} +4 H u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 15, + label = "o_OH_OH", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 O u0 {1,S} {4,S} +4 H u0 {3,S} +5 O u0 {2,S} {6,S} +6 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.32, -0.18, 0.02, 0.24, 0.50, 0.57, 0.44],'cal/(mol*K)'), + H298 = (-0.36,'kcal/mol'), + S298 = (-0.67,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 16, + label = "o_OH_MeO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 O u0 {1,S} {4,S} +4 H u0 {3,S} +5 O u0 {2,S} {6,S} +6 C u0 {5,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.65, -0.36, 0.05, 0.48, 1.00, 1.15, 0.88],'cal/(mol*K)'), + H298 = (-0.72,'kcal/mol'), + S298 = (-1.34,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 17, + label = "o_OH_vinyl", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 O u0 {1,S} {4,S} +4 H u0 {3,S} +5 C u0 {2,S} {6,D} {7,S} +6 C u0 {5,D} {8,S} {9,S} +7 H u0 {5,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.60, 0.65, 0.62, 0.60, 0.50, 0.43, 0.29],'cal/(mol*K)'), + H298 = (0.62,'kcal/mol'), + S298 = (-0.79,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 18, + label = "o_MeO_vinyl", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 O u0 {1,S} {4,S} +4 C u0 {3,S} {10,S} {11,S} {12,S} +5 C u0 {2,S} {6,D} {7,S} +6 C u0 {5,D} {8,S} {9,S} +7 H u0 {5,S} +8 H u0 {6,S} +9 H u0 {6,S} +10 H u0 {4,S} +11 H u0 {4,S} +12 H u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.60, 0.65, 0.62, 0.60, 0.50, 0.43, 0.29],'cal/(mol*K)'), + H298 = (0.62,'kcal/mol'), + S298 = (-0.79,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 2, + label = "o_OCH2j", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 O u0 {1,S} {4,S} +4 C u1 {3,S} {5,S} {6,S} +5 H u0 {4,S} +6 H u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 2, + label = "o_OCH2j_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 O u0 {1,S} {4,S} +4 C u1 {3,S} {5,S} {6,S} +5 H u0 {4,S} +6 H u0 {4,S} +7 C u0 {2,S} {8,S} {9,D} +8 H u0 {7,S} +9 O u0 {7,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.53, 1.20, 1.43, 1.39, 1.00, 0.62, 0.12],'cal/(mol*K)'), + H298 = (1.67,'kcal/mol'), + S298 = (-1.15,'cal/(mol*K)'), + ), + shortDesc = u"""NNI2. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 3, + label = "o_OCH2j_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 O u0 {1,S} {4,S} +4 C u1 {3,S} {5,S} {6,S} +5 H u0 {4,S} +6 H u0 {4,S} +7 O u0 {2,S} {8,S} +8 C u0 {7,S} {9,S} {10,S} {11,S} +9 H u0 {8,S} +10 H u0 {8,S} +11 H u0 {8,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.93, 0.22, -0.22, -0.36, -0.33, -0.29, -0.14],'cal/(mol*K)'), + H298 = (2.75,'kcal/mol'), + S298 = (0.29,'cal/(mol*K)'), + ), + shortDesc = u"""NNI3. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 4, + label = "o_Oj", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 O u1 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 4, + label = "o_Oj_OH", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {4,S} +3 O u1 {1,S} +4 O u0 {2,S} {5,S} +5 H u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-2.06, -1.84, -1.58, -1.27, -0.74, -0.31, 0.38],'cal/(mol*K)'), + H298 = (-8.87,'kcal/mol'), + S298 = (-2.53,'cal/(mol*K)'), + ), + shortDesc = u"""NNI4. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 5, + label = "o_Oj_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {4,S} +3 O u1 {1,S} +4 O u0 {2,S} {5,S} +5 C u0 {4,S} {6,S} {7,S} {8,S} +6 H u0 {5,S} +7 H u0 {5,S} +8 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.60, -0.62, -0.53, -0.33, -0.07, 0.05, 0.12],'cal/(mol*K)'), + H298 = (-1.53,'kcal/mol'), + S298 = (-0.10,'cal/(mol*K)'), + ), + shortDesc = u"""NNI5. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 6, + label = "o_Oj_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {4,S} +3 O u1 {1,S} +4 C u0 {2,S} {5,S} {6,D} +5 H u0 {4,S} +6 O u0 {4,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.22, -0.02, 0.19, 0.41, 0.69, 0.69, 0.41],'cal/(mol*K)'), + H298 = (1.36,'kcal/mol'), + S298 = (-0.10,'cal/(mol*K)'), + ), + shortDesc = u"""NNI8. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 7, + label = "o_Oj_C=C", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {4,S} +3 O u1 {1,S} +4 C u0 {2,S} {5,S} {6,D} +5 H u0 {4,S} +6 C u0 {4,D} {7,S} {8,S} +7 H u0 {6,S} +8 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0, 0, 0.02, 0.10, 0.24, 0.31, 0.36],'cal/(mol*K)'), + H298 = (-1.53,'kcal/mol'), + S298 = (-0.88,'cal/(mol*K)'), + ), + shortDesc = u"""NNI10. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 8, + label = "o_Oj_Cs", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {4,S} +3 O u1 {1,S} +4 C u0 {2,S} {5,S} {6,S} {7,S} +5 H u0 {4,S} +6 H u0 {4,S} +7 [H,Cs] u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.14, -0.12, -0.10, -0.05, -0.05, -0.02, -0.05],'cal/(mol*K)'), + H298 = (-2.06,'kcal/mol'), + S298 = (0.26,'cal/(mol*K)'), + ), + shortDesc = u"""NNI12. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 9, + label = "o_Cj=O", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u1 {1,S} {4,D} +4 O u0 {3,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 9, + label = "o_Cj=O_OH", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 C u1 {1,S} {4,D} +4 O u0 {3,D} +5 O u0 {2,S} {6,S} +6 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-1.53, -1.08, -0.69, -0.24, 0.55, 1.12, 1.65],'cal/(mol*K)'), + H298 = (-4.02,'kcal/mol'), + S298 = (-4.57,'cal/(mol*K)'), + ), + shortDesc = u"""NNI14. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 9, + label = "o_Cj=O_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 C u1 {1,S} {4,D} +4 O u0 {3,D} +5 O u0 {2,S} {6,S} +6 C u0 {5,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.60, 0.33, 0.10, 0, -0.14, -0.19, -0.17],'cal/(mol*K)'), + H298 = (1.77,'kcal/mol'), + S298 = (0.57,'cal/(mol*K)'), + ), + shortDesc = u"""NNI16. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 10, + label = "o_Cj=O_C=C", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {5,S} +3 C u1 {1,S} {4,D} +4 O u0 {3,D} +5 C u0 {2,S} {6,D} {9,S} +6 C u0 {5,D} {7,S} {8,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.76, 0.84, 0.76, 0.62, 0.36, 0.14, 0.02],'cal/(mol*K)'), + H298 = (0.96,'kcal/mol'), + S298 = (-1.39,'cal/(mol*K)'), + ), + shortDesc = u"""NNI19. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 11, + label = "o_C=Cj", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u0 {1,S} {4,D} {5,S} +4 C u1 {3,D} {6,S} +5 H u0 {3,S} +6 H u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 11, + label = "o_C=Cj_OH", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,D} {5,S} +4 C u1 {3,D} {6,S} +5 H u0 {3,S} +6 H u0 {4,S} +7 O u0 {2,S} {8,S} +8 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-1.31, -0.69, 0.14, 1.10, 2.41, 2.87, 2.25],'cal/(mol*K)'), + H298 = (-3.39,'kcal/mol'), + S298 = (-4.21,'cal/(mol*K)'), + ), + shortDesc = u"""NNI20. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 12, + label = "o_C=Cj_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,D} {5,S} +4 C u1 {3,D} {6,S} +5 H u0 {3,S} +6 H u0 {4,S} +7 C u0 {2,S} {8,S} {9,D} +8 H u0 {7,S} +9 O u0 {7,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.53, 0.81, 0.86, 0.79, 0.57, 0.43, 0.24],'cal/(mol*K)'), + H298 = (3.49,'kcal/mol'), + S298 = (-1.29,'cal/(mol*K)'), + ), + shortDesc = u"""NNI21. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 13, + label = "o_C=Cj_C=C", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,D} {5,S} +4 C u1 {3,D} {6,S} +5 H u0 {3,S} +6 H u0 {4,S} +7 C u0 {2,S} {8,S} {9,D} +8 H u0 {7,S} +9 C u0 {7,D} {10,S} {11,S} +10 H u0 {9,S} +11 H u0 {9,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.48, 0.60, 0.53, 0.43, 0.26, 0.17, 0.07],'cal/(mol*K)'), + H298 = (1.82,'kcal/mol'), + S298 = (-1.31,'cal/(mol*K)'), + ), + shortDesc = u"""NNI22. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 14, + label = "o_C=Cj_Cs", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {7,S} +3 C u0 {1,S} {4,D} {5,S} +4 C u1 {3,D} {6,S} +5 H u0 {3,S} +6 H u0 {4,S} +7 C u0 {2,S} {8,S} {9,S} {10,S} +8 H u0 {7,S} +9 H u0 {7,S} +10 [H,Cs] u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.69, 0.65, 0.50, 0.36, 0.14, 0.07, -0.02],'cal/(mol*K)'), + H298 = (1.00,'kcal/mol'), + S298 = (-0.91,'cal/(mol*K)'), + ), + shortDesc = u"""NNI23. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 15, + label = "o_Csj", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} +3 C u1 {1,S} {4,S} {5,S} +4 H u0 {3,S} +5 [H,Cs] u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" + +""", +) + +entry( + index = 15, + label = "o_Csj_C=C", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u1 {1,S} {4,S} {5,S} +4 H u0 {3,S} +5 [H,Cs] u0 {3,S} +6 C u0 {2,S} {7,S} {8,D} +7 H u0 {6,S} +8 C u0 {6,D} {9,S} {10,S} +9 H u0 {8,S} +10 H u0 {8,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.43, 0.29, 0.14, 0.02, -0.12, -0.17, -0.17],'cal/(mol*K)'), + H298 = (1.60,'kcal/mol'), + S298 = (-0.12,'cal/(mol*K)'), + ), + shortDesc = u"""NNI26. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 16, + label = "o_Csj_CHO", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u1 {1,S} {4,S} {5,S} +4 H u0 {3,S} +5 [H,Cs] u0 {3,S} +6 C u0 {2,S} {7,S} {8,D} +7 H u0 {6,S} +8 O u0 {6,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.43, 0.50, 0.43, 0.29, 0.10, -0.05, -0.12],'cal/(mol*K)'), + H298 = (1.31,'kcal/mol'), + S298 = (0.45,'cal/(mol*K)'), + ), + shortDesc = u"""NNI28. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 17, + label = "o_Csj_Cs", + group = +""" +1 *1 Cb u0 {2,B} {3,S} +2 *2 Cb u0 {1,B} {6,S} +3 C u1 {1,S} {4,S} {5,S} +4 H u0 {3,S} +5 [H,Cs] u0 {3,S} +6 C u0 {2,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 [H,Cs] u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.81, 0.62, 0.43, 0.29, 0.12, 0.07, 0.00],'cal/(mol*K)'), + H298 = (0.65,'kcal/mol'), + S298 = (-0.86,'cal/(mol*K)'), + ), + shortDesc = u"""NNI29. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "aromatic-meta", + group = +""" +1 *1 Cb u0 {2,B} +2 Cb u0 {1,B} {3,B} +3 *2 Cb u0 {2,B} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""Aromatics NNI correction for meta position""", + longDesc = +u""" + +""", +) + +entry( + index = 20, + label = "m_CHO_CHO", + group = +""" +1 *1 Cb u0 {2,B} {4,S} +2 Cb u0 {1,B} {3,B} +3 *2 Cb u0 {2,B} {7,S} +4 C u0 {1,S} {5,D} {6,S} +5 O u0 {4,D} +6 H u0 {4,S} +7 C u0 {3,S} {8,D} {9,S} +8 O u0 {7,D} +9 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.20, 0.12, 0.06, 0.01, -0.05, -0.08, -0.10],'cal/(mol*K)'), + H298 = (0.57,'kcal/mol'), + S298 = (0.01,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. Aromatics NNI correction.""", + longDesc = +u""" +""", +) + +entry( + index = 19, + label = "m_Oj_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {4,S} +2 Cb u0 {1,B} {3,B} +3 *2 Cb u0 {2,B} {5,S} +4 O u1 {1,S} +5 O u0 {3,S} {6,S} +6 C u0 {5,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.22, 0.76, 0.98, 1.03, 0.81, 0.55, 0.22],'cal/(mol*K)'), + H298 = (-1.65,'kcal/mol'), + S298 = (-1.00,'cal/(mol*K)'), + ), + shortDesc = u"""NNI6. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 20, + label = "m_Oj_CHO", + group = +""" +1 *1 Cb u0 {2,B} {4,S} +2 Cb u0 {1,B} {3,B} +3 *2 Cb u0 {2,B} {5,S} +4 O u1 {1,S} +5 C u0 {3,S} {6,D} {7,S} +6 O u0 {5,D} +7 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.38, -0.38, -0.38, -0.38, 0.29, 0.22, 0.12],'cal/(mol*K)'), + H298 = (1.12,'kcal/mol'), + S298 = (0.86,'cal/(mol*K)'), + ), + shortDesc = u"""NNI9. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 21, + label = "m_Cj=O_CHO", + group = +""" +1 *1 Cb u0 {2,B} {4,S} +2 Cb u0 {1,B} {3,B} +3 *2 Cb u0 {2,B} {6,S} +4 C u1 {1,S} {5,D} +5 O u0 {4,D} +6 C u0 {3,S} {7,D} {8,S} +7 O u0 {6,D} +8 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.07, 0.17, 0.17, 0.12, 0.00, -0.07, 0.02],'cal/(mol*K)'), + H298 = (1.10,'kcal/mol'), + S298 = (0.81,'cal/(mol*K)'), + ), + shortDesc = u"""NNI17. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "aromatic-para", + group = +""" +1 *1 Cb u0 {2,B} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""Aromatics NNI correction for para position.""", + longDesc = +u""" +""", +) + +entry( + index = 22, + label = "p_OH", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 O u0 {1,S} {6,S} +6 H u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 22, + label = "p_OH_OH", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 O u0 {1,S} {6,S} +6 H u0 {5,S} +7 O u0 {4,S} {8,S} +8 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.20, 0.05, -0.10, -0.20, -0.27, -0.27, -0.20],'cal/(mol*K)'), + H298 = (0.87,'kcal/mol'), + S298 = (0.48,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 23, + label = "p_OH_MeO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 O u0 {1,S} {6,S} +6 H u0 {5,S} +7 O u0 {4,S} {8,S} +8 C u0 {7,S} {9,S} {10,S} {11,S} +9 H u0 {8,S} +10 H u0 {8,S} +11 H u0 {8,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.41, 0.10, -0.19, -0.41, -0.55, -0.55, -0.41],'cal/(mol*K)'), + H298 = (1.74,'kcal/mol'), + S298 = (0.96,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 24, + label = "p_MeO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 O u0 {1,S} {6,S} +6 C u0 {5,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 24, + label = "p_MeO_MeO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 O u0 {1,S} {6,S} +6 C u0 {5,S} {12,S} {13,S} {14,S} +7 O u0 {4,S} {8,S} +8 C u0 {7,S} {9,S} {10,S} {11,S} +9 H u0 {8,S} +10 H u0 {8,S} +11 H u0 {8,S} +12 H u0 {6,S} +13 H u0 {6,S} +14 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.20, 0.05, -0.10, -0.20, -0.27, -0.27, -0.20],'cal/(mol*K)'), + H298 = (0.87,'kcal/mol'), + S298 = (0.48,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 25, + label = "p_CHO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 C u0 {1,S} {6,S} {7,D} +6 H u0 {5,S} +7 O u0 {5,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 25, + label = "p_CHO_CHO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 C u0 {1,S} {6,S} {10,D} +6 H u0 {5,S} +7 C u0 {4,S} {8,D} {9,S} +8 O u0 {7,D} +9 H u0 {7,S} +10 O u0 {5,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.22, 0.17, 0.12, 0.08, 0.01, -0.04, -0.11],'cal/(mol*K)'), + H298 = (1.18,'kcal/mol'), + S298 = (-0.10,'cal/(mol*K)'), + ), + shortDesc = u"""Half value. This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 26, + label = "p_OH_CHO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 O u0 {1,S} {6,S} +6 H u0 {5,S} +7 C u0 {4,S} {8,D} {9,S} +8 O u0 {7,D} +9 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.38, -0.24, -0.07, 0.05, 0.22, 0.29, 0.36],'cal/(mol*K)'), + H298 = (-1.10,'kcal/mol'), + S298 = (-0.19,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 27, + label = "p_MeO_CHO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 O u0 {1,S} {6,S} +6 C u0 {5,S} {10,S} {11,S} {12,S} +7 C u0 {4,S} {8,D} {9,S} +8 O u0 {7,D} +9 H u0 {7,S} +10 H u0 {6,S} +11 H u0 {6,S} +12 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.38, -0.24, -0.07, 0.05, 0.22, 0.29, 0.36],'cal/(mol*K)'), + H298 = (-1.10,'kcal/mol'), + S298 = (-0.19,'cal/(mol*K)'), + ), + shortDesc = u"""This is NNI correction from Ince & Reyniers, AIChE 2015, DOI 10.1002/aic.15008""", + longDesc = +u""" +""", +) + +entry( + index = 23, + label = "p_OCH2j", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 O u0 {1,S} {6,S} +6 C u1 {5,S} {7,S} {8,S} +7 H u0 {6,S} +8 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 23, + label = "p_OCH2j_OH", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {9,S} +5 O u0 {1,S} {6,S} +6 C u1 {5,S} {7,S} {8,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 O u0 {4,S} {10,S} +10 H u0 {9,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.10, -0.19, -0.43, -0.57, -0.65, -0.60, -0.33],'cal/(mol*K)'), + H298 = (1.43,'kcal/mol'), + S298 = (0.91,'cal/(mol*K)'), + ), + shortDesc = u"""NNI1. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 24, + label = "p_OCH2j_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {9,S} +5 O u0 {1,S} {6,S} +6 C u1 {5,S} {7,S} {8,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 O u0 {4,S} {10,S} +10 C u0 {9,S} {11,S} {12,S} {13,S} +11 H u0 {10,S} +12 H u0 {10,S} +13 H u0 {10,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.10, -0.19, -0.43, -0.57, -0.65, -0.60, -0.33],'cal/(mol*K)'), + H298 = (1.43,'kcal/mol'), + S298 = (0.91,'cal/(mol*K)'), + ), + shortDesc = u"""NNI1. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 25, + label = "p_Oj", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 O u1 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 25, + label = "p_Oj_OH", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {6,S} +5 O u1 {1,S} +6 O u0 {4,S} {7,S} +7 H u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.67, -0.60, -0.45, -0.29, -0.02, 0.17, 0.38],'cal/(mol*K)'), + H298 = (-3.78,'kcal/mol'), + S298 = (-0.67,'cal/(mol*K)'), + ), + shortDesc = u"""NNI7. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 26, + label = "p_Oj_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {6,S} +5 O u1 {1,S} +6 O u0 {4,S} {7,S} +7 C u0 {6,S} {8,S} {9,S} {10,S} +8 H u0 {7,S} +9 H u0 {7,S} +10 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.67, -0.60, -0.45, -0.29, -0.02, 0.17, 0.38],'cal/(mol*K)'), + H298 = (-3.78,'kcal/mol'), + S298 = (-0.67,'cal/(mol*K)'), + ), + shortDesc = u"""NNI7. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 27, + label = "p_Oj_C=C", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {6,S} +5 O u1 {1,S} +6 C u0 {4,S} {7,D} {8,S} +7 C u0 {6,D} {9,S} {10,S} +8 H u0 {6,S} +9 H u0 {7,S} +10 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.07, 0.05, 0.05, 0.12, 0.22, 0.29, 0.26],'cal/(mol*K)'), + H298 = (-3.08,'kcal/mol'), + S298 = (-0.72,'cal/(mol*K)'), + ), + shortDesc = u"""NNI11. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 28, + label = "p_Oj_Cs", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {6,S} +5 O u1 {1,S} +6 C u0 {4,S} {7,S} {8,S} {9,S} +7 H u0 {6,S} +8 H u0 {6,S} +9 [H,Cs] u0 {6,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.17, -0.12, -0.10, -0.10, -0.07, -0.05, -0.05],'cal/(mol*K)'), + H298 = (-1.39,'kcal/mol'), + S298 = (0.07,'cal/(mol*K)'), + ), + shortDesc = u"""NNI13. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 29, + label = "p_Cj=O", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 C u1 {1,S} {6,D} +6 O u0 {5,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 29, + label = "p_Cj=O_OH", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 C u1 {1,S} {6,D} +6 O u0 {5,D} +7 O u0 {4,S} {8,S} +8 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.79, -0.65, -0.48, -0.24, 0.05, 0.19, 0.36],'cal/(mol*K)'), + H298 = (-2.06,'kcal/mol'), + S298 = (-0.88,'cal/(mol*K)'), + ), + shortDesc = u"""NNI15. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 30, + label = "p_Cj=O_OCH3", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 C u1 {1,S} {6,D} +6 O u0 {5,D} +7 O u0 {4,S} {8,S} +8 C u0 {7,S} {9,S} {10,S} {11,S} +9 H u0 {8,S} +10 H u0 {8,S} +11 H u0 {8,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.79, -0.65, -0.48, -0.24, 0.05, 0.19, 0.36],'cal/(mol*K)'), + H298 = (-2.06,'kcal/mol'), + S298 = (-0.88,'cal/(mol*K)'), + ), + shortDesc = u"""NNI15. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 31, + label = "p_Cj=O_CHO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {7,S} +5 C u1 {1,S} {6,D} +6 O u0 {5,D} +7 C u0 {4,S} {8,D} {9,S} +8 O u0 {7,D} +9 H u0 {7,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.24, -0.57, -0.84, -0.98, -1.08, -1.03, -0.76],'cal/(mol*K)'), + H298 = (1.29,'kcal/mol'), + S298 = (3.25,'cal/(mol*K)'), + ), + shortDesc = u"""NNI18. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 32, + label = "p_Csj", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} +5 C u1 {1,S} {6,S} {7,S} +6 H u0 {5,S} +7 [H,Cs] u0 {5,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 32, + label = "p_Csj_C=C", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {8,S} +5 C u1 {1,S} {6,S} {7,S} +6 H u0 {5,S} +7 [H,Cs] u0 {5,S} +8 C u0 {4,S} {9,S} {10,D} +9 H u0 {8,S} +10 C u0 {8,D} {11,S} {12,S} +11 H u0 {10,S} +12 H u0 {10,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.22, 0.26, 0.29, 0.33, 0.38, 0.38, 0.31],'cal/(mol*K)'), + H298 = (-1.39,'kcal/mol'), + S298 = (-0.88,'cal/(mol*K)'), + ), + shortDesc = u"""NNI25. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + +entry( + index = 33, + label = "p_Csj_CHO", + group = +""" +1 *1 Cb u0 {2,B} {5,S} +2 Cb u0 {1,B} {3,B} +3 Cb u0 {2,B} {4,B} +4 *2 Cb u0 {3,B} {8,S} +5 C u1 {1,S} {6,S} {7,S} +6 H u0 {5,S} +7 [H,Cs] u0 {5,S} +8 C u0 {4,S} {9,S} {10,D} +9 H u0 {8,S} +10 O u0 {8,D} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.29, -0.22, -0.14, -0.10, -0.07, -0.02, 0.07],'cal/(mol*K)'), + H298 = (-1.24,'kcal/mol'), + S298 = (0.14,'cal/(mol*K)'), + ), + shortDesc = u"""NNI27. This is NNI correction from Ince & Reyniers, AIChE 2016, reviewing""", + longDesc = +u""" +""", +) + + + +tree( +""" +L1: R + L2: aromatic-ortho + L3: o_OH + L4: o_OH_OH + L4: o_OH_MeO + L4: o_OH_vinyl + L4: o_OH_CHO + L3: o_CHO + L4: o_CHO_CHO + L4: o_CHO_vinyl + L4: o_CHO_CH3 + L4: o_CHO_C2H5 + L4: o_CHO_MeO + L3: o_vinyl + L4: o_vinyl_vinyl + L4: o_vinyl_CH3 + L4: o_vinyl_C2H5 + L3: o_MeO + L4: o_MeO_MeO + L4: o_MeO_vinyl + L3: o_CH3 + L4: o_CH3_CH3 + L4: o_CH3_C2H5 + L3: o_C2H5 + L4: o_C2H5_C2H5 + L3: o_Oj + L4: o_Oj_OH + L4: o_Oj_OCH3 + L4: o_Oj_CHO + L4: o_Oj_C=C + L4: o_Oj_Cs + L3: o_OCH2j + L4: o_OCH2j_CHO + L4: o_OCH2j_OCH3 + L3: o_Cj=O + L4: o_Cj=O_OH + L4: o_Cj=O_OCH3 + L4: o_Cj=O_C=C + L3: o_C=Cj + L4: o_C=Cj_OH + L4: o_C=Cj_CHO + L4: o_C=Cj_C=C + L4: o_C=Cj_Cs + L3: o_Csj + L4: o_Csj_C=C + L4: o_Csj_CHO + L4: o_Csj_Cs + L2: aromatic-meta + L3: m_CHO_CHO + L3: m_Oj_OCH3 + L3: m_Oj_CHO + L3: m_Cj=O_CHO + L2: aromatic-para + L3: p_OH + L4: p_OH_OH + L4: p_OH_MeO + L4: p_OH_CHO + L3: p_MeO + L4: p_MeO_MeO + L4: p_MeO_CHO + L3: p_CHO + L4: p_CHO_CHO + L3: p_Oj + L4: p_Oj_OH + L4: p_Oj_OCH3 + L4: p_Oj_C=C + L4: p_Oj_Cs + L3: p_OCH2j + L4: p_OCH2j_OH + L4: p_OCH2j_OCH3 + L3: p_Cj=O + L4: p_Cj=O_OH + L4: p_Cj=O_OCH3 + L4: p_Cj=O_CHO + L3: p_Csj + L4: p_Csj_C=C + L4: p_Csj_CHO +""" +) + diff --git a/input/thermo/groups/longDistanceInteraction_noncyclic.py b/input/thermo/groups/longDistanceInteraction_noncyclic.py new file mode 100644 index 0000000000..5aa0e35521 --- /dev/null +++ b/input/thermo/groups/longDistanceInteraction_noncyclic.py @@ -0,0 +1,1168 @@ +#!/usr/bin/env python +# encoding: utf-8 + +name = "Long distance interaction correction for non-cyclic molecule" +shortDesc = u"" +longDesc = u""" +Designed to account for the long distance interaction for non-cyclic molecule. +Currently include gauche(1,4) and 1,5 interaction corrections. +For gauche interaction, we apply the simple counting scheme as it is in the old RMG database + P-P,S,T,orQ: 0 + S-S: 0 + S-T: 1 + S-Q: 2 + T-T: 2 (except T-T-T, which is 5 total) + T-Q: 4 + Q-Q: 6 + A single gauche correction is worth 0.8 kcal/mol for alkanes and 0.5 kcal/mol for ethers + (cf. Benson, Thermochemical Kinetics: Methods for the Estimation of Thermochemical Data and Rate Parameters, 2nd Edition, 1976. and Cohen and Benson, Chem. Rev. 93 (1993) 2419) + For alkenes, the value of 0.5 kcal/mol is used and the counting scheme discussed in Benson, Cruickshank, Golden, Haugen, O'Neal, Rodgers, Shaw, and Walsh, Chemical Reviews, 1969, 69, 279, was used +For 1,5 interaction, values used are 1976 values (1.5 kcal/mol per 1,5 interaction in alkanes and 3.5 per 1,5 interaction in ethers) + +Watch out: if the groups on the two labeled atoms are identical, it's value should be halved because it'll be counted twice. + For example, the value of the entry CsCS-QQ is (6 * 0.8 / 2)= 2.4, + because Q-Q is counted as 6 gauche corrections, one gauche worth 0.8 kcal/mol, + then divided by 2 since it'll be counted in both {'*1': atom1, '*2'atom2} and {'*2': atom1, '*1'atom2}. + It should be claimed in the 'longDesc' if a entry was halved. + +Sep-30-2016 PZ +""" + +entry( + index = 0, + label = "R", + group = +""" +1 *1 R u0 +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "int14_gauche", + group = +""" +1 *1 [Cs,Os,Cd,Ss] u0 {2,S} +2 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 1, + label = "CsCs", + group = +""" +1 *1 Cs u0 {2,S} +2 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 2, + label = "CsCs-P", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} +3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""Lumped PP/PS/PT/PQ, because they all counted as 0 as long as the first carbon is primary carbon""", + longDesc = +u""" +""", +) + +entry( + index = 2, + label = "CsCs-S", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} +3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +5 Cs u0 {1,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 6, + label = "CsCs-SS", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} +4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 7, + label = "CsCs-ST", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} +4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0.8,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 8, + label = "CsCs-SQ", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} +4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 Cs u0 {2,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.6,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 2, + label = "CsCs-T", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} +3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 9, + label = "CsCs-TT", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} +4 Cs u0 {1,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0.8,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +Half Value!!! +""", +) + +entry( + index = 9, + label = "CsCs-T(TTP)", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} {9,S} {10,S} {11,S} +4 Cs u0 {1,S} {12,S} {13,S} {14,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +9 Cs u0 {3,S} +10 Cs u0 {3,S} +11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} +12 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.2,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +(2 GI)/2 + (1 GI)/2 The additional 1 GI is for TTT structure!!! +""", +) + +entry( + index = 9, + label = "CsCs-T(TTS)", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} {9,S} {10,S} {11,S} +4 Cs u0 {1,S} {12,S} {13,S} {14,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +9 Cs u0 {3,S} +10 Cs u0 {3,S} +11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} +12 Cs u0 {4,S} +13 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.2,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +(2 GI)/2 + (1 GI)/2 The additional 1 GI is for TTT structure!!! +""", +) + +entry( + index = 9, + label = "CsCs-T(TTT)", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} {9,S} {10,S} {11,S} +4 Cs u0 {1,S} {12,S} {13,S} {14,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +9 Cs u0 {3,S} +10 Cs u0 {3,S} +11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} +12 Cs u0 {4,S} +13 Cs u0 {4,S} +14 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.067,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +(2 GI) / 2 + (1 GI) / 3 The additional 1 GI is for TTT structure!!! +""", +) + +entry( + index = 9, + label = "CsCs-T(TTQ)", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} {9,S} {10,S} {11,S} +4 Cs u0 {1,S} {12,S} {13,S} {14,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +9 Cs u0 {3,S} +10 Cs u0 {3,S} +11 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {3,S} +12 Cs u0 {4,S} +13 Cs u0 {4,S} +14 Cs u0 {4,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.2,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +(2 GI)/2 + (1 GI)/2 The additional 1 GI is for TTT structure!!! +""", +) + +entry( + index = 10, + label = "CsCs-TQ", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} +4 Cs u0 {1,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 Cs u0 {2,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (3.2,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 2, + label = "CsCs-Q", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} +3 Cs u0 {1,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 11, + label = "CsCs-QQ", + group = +""" +1 *1 Cs u0 {2,S} {3,S} {4,S} {5,S} +2 *2 Cs u0 {1,S} {6,S} {7,S} {8,S} +3 Cs u0 {1,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {2,S} +7 Cs u0 {2,S} +8 Cs u0 {2,S} +""", + + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (2.4,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +Half Value!!! +""", +) + +entry( + index = 12, + label = "OsCs", + group = +""" +1 *1 Os u0 {2,S} +2 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 13, + label = "OsCs-P", + group = +""" +1 *1 Os u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} +3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 14, + label = "OsCs-S", + group = +""" +1 *1 Os u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} +3 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 14, + label = "OsCs-SP", + group = +""" +1 *1 Os u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} {4,S} {5,S} {6,S} +3 Cs u0 {1,S} +4 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 15, + label = "OsCs-SS", + group = +""" +1 *1 Os u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} {4,S} {5,S} {6,S} +3 Cs u0 {1,S} +4 Cs u0 {2,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 16, + label = "OsCs-ST", + group = +""" +1 *1 Os u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} {4,S} {5,S} {6,S} +3 Cs u0 {1,S} +4 Cs u0 {2,S} +5 Cs u0 {2,S} +6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {2,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0.5,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 17, + label = "OsCs-SQ", + group = +""" +1 *1 Os u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} {4,S} {5,S} {6,S} +3 Cs u0 {1,S} +4 Cs u0 {2,S} +5 Cs u0 {2,S} +6 Cs u0 {2,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 18, + label = "CdCs", + group = +""" +1 *1 Cd u0 {2,D} {3,S} +2 Cd u0 {1,D} +3 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 18, + label = "CdCs-P", + group = +""" +1 *1 Cd u0 {2,D} {3,S} {4,S} +2 Cd u0 {1,D} +3 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +4 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 19, + label = "CdCs-S", + group = +""" +1 *1 Cd u0 {2,D} {3,S} {4,S} +2 Cd u0 {1,D} +3 Cs u0 {1,S} +4 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 19, + label = "CdCs-SP", + group = +""" +1 *1 Cd u0 {2,D} {3,S} {4,S} +2 Cd u0 {1,D} +3 Cs u0 {1,S} +4 *2 Cs u0 {1,S} {5,S} {6,S} {7,S} +5 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 20, + label = "CdCs-SS", + group = +""" +1 *1 Cd u0 {2,D} {3,S} {4,S} +2 Cd u0 {1,D} +3 Cs u0 {1,S} +4 *2 Cs u0 {1,S} {5,S} {6,S} {7,S} +5 Cs u0 {4,S} +6 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 21, + label = "CdCs-ST", + group = +""" +1 *1 Cd u0 {2,D} {3,S} {4,S} +2 Cd u0 {1,D} +3 Cs u0 {1,S} +4 *2 Cs u0 {1,S} {5,S} {6,S} {7,S} +5 Cs u0 {4,S} +6 Cs u0 {4,S} +7 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 22, + label = "CdCs-SQ", + group = +""" +1 *1 Cd u0 {2,D} {3,S} {4,S} +2 Cd u0 {1,D} +3 Cs u0 {1,S} +4 *2 Cs u0 {1,S} {5,S} {6,S} {7,S} +5 Cs u0 {4,S} +6 Cs u0 {4,S} +7 Cs u0 {4,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 23, + label = "SsCs", + group = +""" +1 *1 Ss u0 {2,S} +2 *2 Cs u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 24, + label = "Ss(Cs(CsHH)H)", + group = +""" +1 *1 Ss u0 {2,S} {3,S} +2 *2 Cs u0 {1,S} {4,S} {5,S} {6,S} +3 H u0 {1,S} +4 H u0 {2,S} +5 H u0 {2,S} +6 Cs u0 {2,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0.33,0.62,0.67,0.59,0.38,0.21,-0.01],'cal/(mol*K)'), + H298 = (-0.97,'kcal/mol'), + S298 = (-1.01,'cal/(mol*K)'), + ), + shortDesc = u"""From old version - gauche.py""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "int15", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} +2 [Cs,Os,Ss] u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsCsCs", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} +2 Cs u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsCsCs-TQ", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} {9,S} +2 Cs u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.5,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsCsCs-QQ", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} {6,S} +2 Cs u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {7,S} {8,S} {9,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {1,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +9 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (1.5,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +Half Value!!! +""", +) + +entry( + index = 0, + label = "CsOsCs", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} +2 Os u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsOsCs-TQ", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} {9,S} +2 Os u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (3.5,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsOsCs-QQ", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} {6,S} +2 Os u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {7,S} {8,S} {9,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {1,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +9 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (3.5,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +Half Value!!! +""", +) + +entry( + index = 0, + label = "CsSsCs", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} +2 Ss u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([0,0,0,0,0,0,0],'cal/(mol*K)'), + H298 = (0,'kcal/mol'), + S298 = (0,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsSsCs-TQ", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} {9,S} +2 Ss u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {6,S} {7,S} {8,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {3,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +9 [Cd,Cdd,Ct,Cb,Cbf,Os,CO,H] u0 {1,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.1,-0.2,-0.1,0,0.2,0.1,-0.2],'cal/(mol*K)'), + H298 = (3.1,'kcal/mol'), + S298 = (-1.9,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +""", +) + +entry( + index = 0, + label = "CsSsCs-QQ", + group = +""" +1 *1 Cs u0 {2,S} {4,S} {5,S} {6,S} +2 Ss u0 {1,S} {3,S} +3 *2 Cs u0 {2,S} {7,S} {8,S} {9,S} +4 Cs u0 {1,S} +5 Cs u0 {1,S} +6 Cs u0 {1,S} +7 Cs u0 {3,S} +8 Cs u0 {3,S} +9 Cs u0 {3,S} +""", + thermo = ThermoData( + Tdata = ([300,400,500,600,800,1000,1500],'K'), + Cpdata = ([-0.5,-0.5,-0.4,-0.35,-0.3,-0.35,-0.5],'cal/(mol*K)'), + H298 = (2.85,'kcal/mol'), + S298 = (-0.85,'cal/(mol*K)'), + ), + shortDesc = u"""""", + longDesc = +u""" +Half Value!!! +""", +) + +tree( +""" +L1: R + L2: int14_gauche + L3: CsCs + L4: CsCs-P + L4: CsCs-S + L5: CsCs-SS + L5: CsCs-ST + L5: CsCs-SQ + L4: CsCs-T + L5: CsCs-TT + L6: CsCs-T(TTP) + L6: CsCs-T(TTS) + L6: CsCs-T(TTT) + L6: CsCs-T(TTQ) + L5: CsCs-TQ + L4: CsCs-Q + L5: CsCs-QQ + L3: OsCs + L4: OsCs-P + L4: OsCs-S + L5: OsCs-SP + L5: OsCs-SS + L5: OsCs-ST + L5: OsCs-SQ + L3: CdCs + L4: CdCs-P + L4: CdCs-S + L5: CdCs-SP + L5: CdCs-SS + L5: CdCs-ST + L5: CdCs-SQ + L3: SsCs + L4: Ss(Cs(CsHH)H) + L2: int15 + L3: CsCsCs + L4: CsCsCs-TQ + L4: CsCsCs-QQ + L3: CsOsCs + L4: CsOsCs-TQ + L4: CsOsCs-QQ + L3: CsSsCs + L4: CsSsCs-TQ + L4: CsSsCs-QQ +""" +) diff --git a/input/thermo/libraries/SulfurLibrary.py b/input/thermo/libraries/SulfurLibrary.py index fc789ea64b..373b4075c8 100644 --- a/input/thermo/libraries/SulfurLibrary.py +++ b/input/thermo/libraries/SulfurLibrary.py @@ -4,7 +4,23 @@ name = "SulfurLibrary" shortDesc = u"" longDesc = u""" - +Thermo Library for Sulfur Compounds +Unless othewise noted in "Comments," all values are from QM calculations (CBS-QB3 with 1D-HR corrections). +Uncertainties estimated at 1.00, unless experimental uncertainty available. + +References +[1] Good, W.D. et al. J. Phys. Chem., 1961, 65, 2229-2231. +[2] McCullough, J.P. et al. J. Am. Chem. Soc., 1957, 79, 561-566. +[3] Hubbard, W.N.; Waddington, G. Rec. Trav. Chim. Pays/Bas, 1954, 73, 910. +[4] Hubbard, W.N. et al. J. Phys. Chem., 1958, 62, 614-617. +[5] Voronkov, M.G. et al. Dokl. Phys. Chem. (Engl. Transl.), 1989, 307, 650-653. +[6] Scott, D.W. et al. J. Chem. Phys., 1962, 36, 406-412. +[7] Ruscic, B.; Berkowitz, J., J. Chem. Phys., 1993, 98, 2568-2579. +[8] Roy, M.; McMahon, T.B. Org. Mass Spectrom., 1982, 8, 392-395. +[9] Butler, J.J.; Baer, T., Org. Mass Spectrom., 1983, 18, 248-253. +[10] Chase, M.W., Jr., NIST-JANAF Thermochemical Tables, Fourth Edition, + J. Phys. Chem. Ref. Data, Monograph 9, 1998, 1-1951. +[11] Alfassi, Z.B., S-centered radicals. 1999. """ entry( index = 1, @@ -24,7 +40,6 @@ shortDesc = u"""All from [10]""", longDesc = u""" - """, ) @@ -48,7 +63,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -70,7 +84,6 @@ shortDesc = u"""All from [10]""", longDesc = u""" - """, ) @@ -93,7 +106,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -117,7 +129,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -142,7 +153,6 @@ shortDesc = u"""H298 from [1]""", longDesc = u""" - """, ) @@ -170,7 +180,6 @@ shortDesc = u"""H298 from [5]""", longDesc = u""" - """, ) @@ -200,7 +209,6 @@ shortDesc = u"""H298 from [5], strong disagreement w/ QM""", longDesc = u""" - """, ) @@ -228,7 +236,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -254,7 +261,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -283,7 +289,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -310,7 +315,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -334,7 +338,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -361,7 +364,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -389,7 +391,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -415,7 +416,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -441,7 +441,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -466,7 +465,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -494,7 +492,6 @@ shortDesc = u"""H298 from [2]""", longDesc = u""" - """, ) @@ -523,7 +520,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -552,7 +548,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -579,7 +574,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -605,7 +599,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -632,7 +625,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -663,7 +655,6 @@ shortDesc = u"""H298 from [3]""", longDesc = u""" - """, ) @@ -695,7 +686,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -725,7 +715,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -754,7 +743,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -784,7 +772,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -818,7 +805,6 @@ shortDesc = u"""H298 from [4]""", longDesc = u""" - """, ) @@ -844,7 +830,6 @@ shortDesc = u"""Expt available [9]""", longDesc = u""" - """, ) @@ -876,7 +861,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -911,7 +895,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -940,7 +923,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -967,7 +949,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -992,7 +973,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1017,7 +997,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1046,7 +1025,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1076,7 +1054,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1104,7 +1081,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1132,7 +1108,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1158,7 +1133,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1182,7 +1156,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1209,7 +1182,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1235,7 +1207,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1260,7 +1231,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1291,7 +1261,6 @@ shortDesc = u"""H298 from [3]""", longDesc = u""" - """, ) @@ -1325,7 +1294,6 @@ shortDesc = u"""H298 from [4]""", longDesc = u""" - """, ) @@ -1362,7 +1330,6 @@ shortDesc = u"""H298 from [6]""", longDesc = u""" - """, ) @@ -1394,7 +1361,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1429,7 +1395,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1459,7 +1424,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1492,7 +1456,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1524,7 +1487,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1553,7 +1515,6 @@ shortDesc = u"""H298 from [5]""", longDesc = u""" - """, ) @@ -1583,7 +1544,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1611,7 +1571,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1638,7 +1597,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1668,7 +1626,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1691,7 +1648,6 @@ shortDesc = u"""Expts available [7] and [8]""", longDesc = u""" - """, ) @@ -1718,7 +1674,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1750,7 +1705,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1785,7 +1739,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1823,7 +1776,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1854,7 +1806,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1882,7 +1833,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1918,7 +1868,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1950,7 +1899,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -1980,7 +1928,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2013,7 +1960,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2043,7 +1989,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2079,7 +2024,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2112,7 +2056,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2142,7 +2085,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2173,7 +2115,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2200,7 +2141,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2231,7 +2171,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2266,7 +2205,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2293,7 +2231,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2323,7 +2260,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2355,7 +2291,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2390,7 +2325,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2423,7 +2357,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2458,7 +2391,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2480,7 +2412,6 @@ shortDesc = u"""All from [10]""", longDesc = u""" - """, ) @@ -2505,7 +2436,6 @@ shortDesc = u"""H298, S298 from [11]""", longDesc = u""" - """, ) @@ -2531,7 +2461,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2555,7 +2484,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2579,7 +2507,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2602,7 +2529,6 @@ shortDesc = u"""Expt available [11]""", longDesc = u""" - """, ) @@ -2628,7 +2554,6 @@ shortDesc = u"""Expts available [11]""", longDesc = u""" - """, ) @@ -2652,7 +2577,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2677,7 +2601,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2705,7 +2628,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2734,7 +2656,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2761,7 +2682,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2788,7 +2708,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2814,7 +2733,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2845,7 +2763,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2877,7 +2794,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2907,7 +2823,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2937,7 +2852,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2966,7 +2880,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -2992,7 +2905,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3018,7 +2930,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3067,7 +2978,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3096,7 +3006,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3127,7 +3036,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3161,7 +3069,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3190,7 +3097,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3219,7 +3125,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3249,7 +3154,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3278,7 +3182,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3305,7 +3208,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3333,7 +3235,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3362,7 +3263,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3391,7 +3291,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3422,7 +3321,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3456,7 +3354,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3493,7 +3390,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3529,7 +3425,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3551,7 +3446,6 @@ shortDesc = u"""All from [10]""", longDesc = u""" - """, ) @@ -3572,7 +3466,6 @@ shortDesc = u"""All from [10]""", longDesc = u""" - """, ) @@ -3606,7 +3499,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3640,7 +3532,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3666,7 +3557,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3695,7 +3585,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3721,7 +3610,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3750,7 +3638,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3774,7 +3661,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3798,7 +3684,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3822,7 +3707,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3844,7 +3728,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3872,7 +3755,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3901,7 +3783,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3930,7 +3811,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -3964,7 +3844,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4000,7 +3879,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4022,7 +3900,6 @@ shortDesc = u"""H298 from [10]""", longDesc = u""" - """, ) @@ -4045,7 +3922,6 @@ shortDesc = u"""H298 from [10]""", longDesc = u""" - """, ) @@ -4069,7 +3945,6 @@ shortDesc = u"""H298 from [10]""", longDesc = u""" - """, ) @@ -4094,7 +3969,6 @@ shortDesc = u"""H298 from [10]""", longDesc = u""" - """, ) @@ -4120,7 +3994,6 @@ shortDesc = u"""H298 from [10]""", longDesc = u""" - """, ) @@ -4147,7 +4020,6 @@ shortDesc = u"""H298 from [10]""", longDesc = u""" - """, ) @@ -4188,7 +4060,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4228,7 +4099,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4257,7 +4127,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4289,7 +4158,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4319,7 +4187,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4349,7 +4216,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4381,7 +4247,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4413,7 +4278,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4443,7 +4307,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4476,7 +4339,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4507,7 +4369,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4536,7 +4397,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4565,7 +4425,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4594,7 +4453,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4652,7 +4510,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4710,7 +4567,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4748,7 +4604,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4789,7 +4644,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4828,7 +4682,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4867,7 +4720,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4908,7 +4760,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4949,7 +4800,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -4988,7 +4838,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5030,7 +4879,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5070,7 +4918,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5128,7 +4975,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5186,7 +5032,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5244,7 +5089,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5302,7 +5146,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5340,7 +5183,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5378,7 +5220,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5416,7 +5257,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5456,7 +5296,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5494,7 +5333,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5528,7 +5366,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5564,7 +5401,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5600,7 +5436,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5636,7 +5471,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5670,7 +5504,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5704,7 +5537,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5742,7 +5574,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5780,7 +5611,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5816,7 +5646,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5850,7 +5679,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5888,7 +5716,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5922,7 +5749,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5953,7 +5779,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -5984,7 +5809,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -6030,7 +5854,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -6076,7 +5899,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -6122,7 +5944,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -6168,7 +5989,6 @@ shortDesc = u"""""", longDesc = u""" - """, ) @@ -6192,3 +6012,4 @@ Singlet sulfur, thermo data copied from triplet sulfur, likely very incorrect. """, ) + diff --git a/meta.yaml b/meta.yaml index faca70fec3..6f30c2325b 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,7 +1,7 @@ # For conda build package: name: rmgdatabase - version: "2.1.2" + version: "2.1.3" source: path: . diff --git a/setup.py b/setup.py index 0533eec340..617b399e6e 100644 --- a/setup.py +++ b/setup.py @@ -44,7 +44,7 @@ # Initiate the build and/or installation setup(name='RMG-database', - version='2.1.2', + version='2.1.3', description='Reaction Mechanism Generator Database', author='William H. Green and the RMG Team', author_email='rmg_dev@mit.edu', diff --git a/testing/databaseTest.py b/testing/databaseTest.py deleted file mode 100644 index 9ad57ca25d..0000000000 --- a/testing/databaseTest.py +++ /dev/null @@ -1,920 +0,0 @@ -""" -This scripts runs tests on the database -""" -import os.path -import logging -from external.wip import work_in_progress -from rmgpy import settings -from rmgpy.data.rmg import RMGDatabase -from copy import copy -from rmgpy.data.base import LogicOr -from rmgpy.molecule import Group, ImplicitBenzeneError, UnexpectedChargeError -from rmgpy.molecule.atomtype import atomTypes -from rmgpy.molecule.pathfinder import find_shortest_path - -import nose -import nose.tools - - -class TestDatabase(): # cannot inherit from unittest.TestCase if we want to use nose test generators - """ - Contains unit tests for the database for rigorous error checking. - """ - @classmethod - def setUpClass(cls): - """ - Load the database before running the tests. - """ - databaseDirectory = settings['database.directory'] - cls.database = RMGDatabase() - cls.database.load(databaseDirectory, kineticsFamilies='all') - - # These are generators, that call the methods below. - def test_kinetics(self): - for family_name, family in self.database.kinetics.families.iteritems(): - - test = lambda x: self.kinetics_checkCorrectNumberofNodesInRules(family_name) - test_name = "Kinetics family {0}: rules have correct number of nodes?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, None - - test = lambda x: self.kinetics_checkNodesInRulesFoundInGroups(family_name) - test_name = "Kinetics family {0}: rules' nodes exist in the groups?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, None - - test = lambda x: self.kinetics_checkGroupsFoundInTree(family_name) - test_name = "Kinetics family {0}: groups are in the tree with proper parents?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, None - - test = lambda x: self.kinetics_checkGroupsNonidentical(family_name) - test_name = "Kinetics family {0}: groups are not identical?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - test = lambda x: self.kinetics_checkChildParentRelationships(family_name) - test_name = "Kinetics family {0}: parent-child relationships are correct?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - test = lambda x: self.kinetics_checkSiblingsForParents(family_name) - test_name = "Kinetics family {0}: sibling relationships are correct?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - test = lambda x: self.kinetics_checkCdAtomType(family_name) - test_name = "Kinetics family {0}: Cd, CS, CO, and Cdd atomtype used correctly?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - test = lambda x: self.kinetics_checkReactantAndProductTemplate(family_name) - test_name = "Kinetics family {0}: reactant and product templates correctly defined?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - #these families have some sort of difficulty which prevents us from testing accessibility right now - difficultFamilies = ['Diels_alder_addition', 'Intra_R_Add_Exocyclic', 'Intra_R_Add_Endocyclic'] - - if len(family.forwardTemplate.reactants) < len(family.groups.top) and family_name not in difficultFamilies: - test = lambda x: self.kinetics_checkUnimolecularGroups(family_name) - test_name = "Kinetics family {0} check that unimolecular group is formatted correctly?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - if family_name not in difficultFamilies: - test = lambda x: self.kinetics_checkSampleDescendsToGroup(family_name) - test_name = "Kinetics family {0}: Entry is accessible?".format(family_name) - test.description = test_name - self.compat_func_name = test_name - yield test, family_name - - for depository in family.depositories: - - test = lambda x: self.kinetics_checkAdjlistsNonidentical(depository) - test_name = "Kinetics {1} Depository: check adjacency lists are nonidentical?".format(family_name, depository.label) - test.description = test_name - self.compat_func_name = test_name - yield test, depository.label - - for library_name, library in self.database.kinetics.libraries.iteritems(): - - test = lambda x: self.kinetics_checkAdjlistsNonidentical(library) - test_name = "Kinetics library {0}: check adjacency lists are nonidentical?".format(library_name) - test.description = test_name - self.compat_func_name = test_name - yield test, library_name - - - def test_thermo(self): - for group_name, group in self.database.thermo.groups.iteritems(): - test = lambda x: self.general_checkNodesFoundInTree(group_name, group) - test_name = "Thermo groups {0}: nodes are in the tree with proper parents?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkGroupsNonidentical(group_name, group) - test_name = "Thermo groups {0}: nodes are nonidentical?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkChildParentRelationships(group_name, group) - test_name = "Thermo groups {0}: parent-child relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSiblingsForParents(group_name, group) - test_name = "Thermo groups {0}: sibling relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkCdAtomType(group_name, group) - test_name = "Thermo groups {0}: Cd atomtype used correctly?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSampleDescendsToGroup(group_name, group) - test_name = "Thermo groups {0}: Entry is accessible?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - def test_solvation(self): - for group_name, group in self.database.solvation.groups.iteritems(): - test = lambda x: self.general_checkNodesFoundInTree(group_name, group) - test_name = "Solvation groups {0}: nodes are in the tree with proper parents?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkGroupsNonidentical(group_name, group) - test_name = "Solvation groups {0}: nodes are nonidentical?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkChildParentRelationships(group_name, group) - test_name = "Solvation groups {0}: parent-child relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSiblingsForParents(group_name, group) - test_name = "Solvation groups {0}: sibling relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkCdAtomType(group_name, group) - test_name = "Solvation groups {0}: Cd atomtype used correctly?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSampleDescendsToGroup(group_name, group) - test_name = "Solvation groups {0}: Entry is accessible?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - def test_statmech(self): - for group_name, group in self.database.statmech.groups.iteritems(): - test = lambda x: self.general_checkNodesFoundInTree(group_name, group) - test_name = "Statmech groups {0}: nodes are in the tree with proper parents?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkGroupsNonidentical(group_name, group) - test_name = "Statmech groups {0}: nodes are nonidentical?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkChildParentRelationships(group_name, group) - test_name = "Statmech groups {0}: parent-child relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSiblingsForParents(group_name, group) - test_name = "Statmech groups {0}: sibling relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkCdAtomType(group_name, group) - test_name = "Statmech groups {0}: Cd atomtype used correctly?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSampleDescendsToGroup(group_name, group) - test_name = "Statmech groups {0}: Entry is accessible?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - def test_transport(self): - for group_name, group in self.database.transport.groups.iteritems(): - test = lambda x: self.general_checkNodesFoundInTree(group_name, group) - test_name = "Transport groups {0}: nodes are in the tree with proper parents?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkGroupsNonidentical(group_name, group) - test_name = "Transport groups {0}: nodes are nonidentical?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkChildParentRelationships(group_name, group) - test_name = "Transport groups {0}: parent-child relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSiblingsForParents(group_name, group) - test_name = "Transport groups {0}: sibling relationships are correct?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkCdAtomType(group_name, group) - test_name = "Transport groups {0}: Cd, CS, CO, and Cdd atomtype used correctly?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - test = lambda x: self.general_checkSampleDescendsToGroup(group_name, group) - test_name = "Transport groups {0}: Entry is accessible?".format(group_name) - test.description = test_name - self.compat_func_name = test_name - yield test, group_name - - - # These are the actual tests, that don't start with a "test_" name: - def kinetics_checkCorrectNumberofNodesInRules(self, family_name): - """ - This test ensures that each rate rule contains the proper number of nodes according to the family it originates. - """ - family = self.database.kinetics.families[family_name] - expectedNumberNodes = len(family.getRootTemplate()) - for label, entries in family.rules.entries.iteritems(): - for entry in entries: - nodes = label.split(';') - nose.tools.assert_equal(len(nodes), expectedNumberNodes, "Wrong number of groups or semicolons in family {family} rule {entry}. Should be {num_nodes}".format(family=family_name, entry=entry, num_nodes=expectedNumberNodes)) - - def kinetics_checkNodesInRulesFoundInGroups(self, family_name): - """ - This test ensures that each rate rule contains nodes that exist in the groups and that they match the order of the forwardTemplate. - """ - family = self.database.kinetics.families[family_name] - - # List of the each top node's descendants (including the top node) - topDescendants = [] - for topNode in family.getRootTemplate(): - nodes = [topNode] - nodes.extend(family.groups.descendants(topNode)) - topDescendants.append(nodes) - - topGroupOrder = ';'.join(topNode.label for topNode in family.getRootTemplate()) - - for label, entries in family.rules.entries.iteritems(): - for entry in entries: - nodes = label.split(';') - for i, node in enumerate(nodes): - nose.tools.assert_true(node in family.groups.entries, "In {family} family, no group definition found for label {label} in rule {entry}".format(family=family_name, label=node, entry=entry)) - nose.tools.assert_true(family.groups.entries[node] in topDescendants[i], "In {family} family, rule {entry} was found with groups out of order. The correct order for a rule should be subgroups of {top}.".format(family=family_name, entry=entry, top=topGroupOrder)) - - def kinetics_checkGroupsFoundInTree(self, family_name): - """ - This test checks whether groups are found in the tree, with proper parents. - """ - family = self.database.kinetics.families[family_name] - for nodeName, nodeGroup in family.groups.entries.iteritems(): - nose.tools.assert_false('[' in nodeName or ']' in nodeName, "Group {group} in {family} family contains square brackets [ ] in the label, which are not allowed.".format(group=nodeName, family=family_name)) - ascendParent = nodeGroup - # Check whether the node has proper parents unless it is the top reactant or product node - while ascendParent not in family.groups.top and ascendParent not in family.forwardTemplate.products: - child = ascendParent - ascendParent = ascendParent.parent - nose.tools.assert_true(ascendParent is not None, "Group {group} in {family} family was found in the tree without a proper parent.".format(group=child, family=family_name)) - nose.tools.assert_true(child in ascendParent.children, "Group {group} in {family} family was found in the tree without a proper parent.".format(group=nodeName, family=family_name)) - nose.tools.assert_false(child is ascendParent, "Group {group} in {family} family is a parent to itself".format(group=nodeName, family=family_name)) - - def kinetics_checkGroupsNonidentical(self, family_name): - """ - This test checks that the groups are non-identical. - """ - from rmgpy.data.base import Database - originalFamily = self.database.kinetics.families[family_name] - family = Database() - family.entries = originalFamily.groups.entries - entriesCopy = copy(family.entries) - for nodeName, nodeGroup in family.entries.iteritems(): - del entriesCopy[nodeName] - for nodeNameOther, nodeGroupOther in entriesCopy.iteritems(): - nose.tools.assert_false(family.matchNodeToNode(nodeGroup, nodeGroupOther), "Group {group} in {family} family was found to be identical to group {groupOther}".format(group=nodeName, family=family_name, groupOther=nodeNameOther)) - - def kinetics_checkChildParentRelationships(self, family_name): - """ - This test checks that groups' parent-child relationships are correct in the database. - """ - from rmgpy.data.base import Database - originalFamily = self.database.kinetics.families[family_name] - family = Database() - family.entries = originalFamily.groups.entries - for nodeName, childNode in family.entries.iteritems(): - #top nodes and product nodes don't have parents by definition, so they get an automatic pass: - if childNode in originalFamily.groups.top or childNode in originalFamily.forwardTemplate.products: continue - parentNode = childNode.parent - - if parentNode is None: - # This is a mistake in the database, but it should be caught by kinetics_checkGroupsFoundInTree - # so rather than report it twice or crash, we'll just silently carry on to the next node. - continue - elif parentNode in originalFamily.forwardTemplate.products: - #This is a product node made by training reactions which we do not need to heck - continue - # Check whether the node has proper parents unless it is the top reactant or product node - # The parent should be more general than the child - nose.tools.assert_true(family.matchNodeToChild(parentNode, childNode), - "In {family} family, group {parent} is not a proper parent of its child {child}.".format(family=family_name, parent=parentNode, child=nodeName)) - - #check that parentNodes which are LogicOr do not have an ancestor that is a Group - #If it does, then the childNode must also be a child of the ancestor - if isinstance(parentNode.item, LogicOr): - ancestorNode = parentNode - while ancestorNode not in originalFamily.groups.top and isinstance(ancestorNode.item, LogicOr): - ancestorNode = ancestorNode.parent - if isinstance(ancestorNode.item, Group): - nose.tools.assert_true(family.matchNodeToChild(ancestorNode, childNode), - "In {family} family, group {ancestor} is not a proper ancestor of its child {child}.".format(family=family_name, ancestor=ancestorNode, child=nodeName)) - - def kinetics_checkSiblingsForParents(self, family_name): - """ - This test checks that siblings in a tree are not actually parent/child - - See general_checkSiblingsForParents comments for more detailed description - of the test. - """ - from rmgpy.data.base import Database - originalFamily = self.database.kinetics.families[family_name] - family = Database() - family.entries = originalFamily.groups.entries - for nodeName, node in family.entries.iteritems(): - #Some families also construct a 2-level trees for the products - #(root with all entries down one level) We don't care about this - #tree as it is not used in searching, so we ignore products - if node in originalFamily.forwardTemplate.products: continue - for index, child1 in enumerate(node.children): - for child2 in node.children[index+1:]: - nose.tools.assert_false(family.matchNodeToChild(child1, child2), - "In family {0}, node {1} is a parent of {2}, but they are written as siblings.".format(family_name, child1, child2)) - - def kinetics_checkAdjlistsNonidentical(self, database): - """ - This test checks whether adjacency lists of reactants in a KineticsDepository or KineticsLibrary database object are nonidentical. - """ - speciesDict = {} - entries = database.entries.values() - for entry in entries: - for reactant in entry.item.reactants: - if reactant.label not in speciesDict: - speciesDict[reactant.label] = reactant - - for product in entry.item.products: - if product.label not in speciesDict: - speciesDict[product.label] = product - - # Go through all species to make sure they are nonidentical - speciesList = speciesDict.values() - labeledAtoms = [species.molecule[0].getLabeledAtoms() for species in speciesList] - for i in range(len(speciesList)): - for j in range(i+1,len(speciesList)): - initialMap = {} - try: - for atomLabel in labeledAtoms[i]: - initialMap[labeledAtoms[i][atomLabel]] = labeledAtoms[j][atomLabel] - except KeyError: - # atom labels did not match, therefore not a match - continue - - nose.tools.assert_false(speciesList[i].molecule[0].isIsomorphic(speciesList[j].molecule[0], initialMap), "Species {0} and species {1} in {2} database were found to be identical.".format(speciesList[i].label,speciesList[j].label,database.label)) - - def kinetics_checkReactantAndProductTemplate(self, family_name): - """ - This test checks whether the reactant and product templates within a family are correctly defined. - For a reversible family, the reactant and product templates must have matching labels. - For a non-reversible family, the reactant and product templates must have non-matching labels, otherwise overwriting may occur. - """ - family = self.database.kinetics.families[family_name] - if family.ownReverse: - nose.tools.assert_equal(family.forwardTemplate.reactants, family.forwardTemplate.products) - else: - reactant_labels = [reactant.label for reactant in family.forwardTemplate.reactants] - product_labels = [product.label for product in family.forwardTemplate.products] - for reactant_label in reactant_labels: - for product_label in product_labels: - nose.tools.assert_false(reactant_label==product_label, "Reactant label {0} matches that of product label {1} in a non-reversible family template. Please rename product label.".format(reactant_label,product_label)) - - def kinetics_checkCdAtomType(self, family_name): - """ - This test checks that groups containing Cd, CO, CS and Cdd atomtypes are used - correctly according to their strict definitions - """ - family = self.database.kinetics.families[family_name] - targetLabel=['Cd', 'CO', 'CS', 'Cdd'] - targetAtomTypes=[atomTypes[x] for x in targetLabel] - - #ignore product entries that get created from training reactions - ignore=[] - if not family.ownReverse: - for product in family.forwardTemplate.products: - ignore.append(product) - ignore.extend(product.children) - else: ignore=[] - - for entryName, entry in family.groups.entries.iteritems(): - #ignore products - if entry in ignore: continue - #ignore LogicOr groups - if isinstance(entry.item, Group): - for index, atom in enumerate(entry.item.atoms): - for atomtype1 in atom.atomType: - if atomtype1 in targetAtomTypes: - break - #If Cd not found in atomTypes, go to next atom - else: continue - #Create list of all the atomTypes that should be present in addition or instead of Cd - correctAtomList=[] - num_of_Dbonds=sum([1 if x.order[0] is 'D' and len(x.order)==1 else 0 for x in atom.bonds.values()]) - if num_of_Dbonds == 2: - correctAtomList.append('Cdd') - elif num_of_Dbonds == 1: - for ligand, bond in atom.bonds.iteritems(): - #Ignore ligands that are not double bonded - if any([abs(2-order) < 1e-7 for order in bond.order]): - for ligAtomType in ligand.atomType: - if ligand.atomType[0].isSpecificCaseOf(atomTypes['O']): correctAtomList.append('CO') - elif ligand.atomType[0].isSpecificCaseOf(atomTypes['S']): correctAtomList.append('CS') - - #remove duplicates from correctAtom: - correctAtomList=list(set(correctAtomList)) - for correctAtom in correctAtomList: - nose.tools.assert_true(atomTypes[correctAtom] in atom.atomType, - """In family {0}, node {1} is missing the atomtype {2} in atom {3} and may be misusing the atomtype Cd, CO, CS, or Cdd. -The following adjList may have atoms in a different ordering than the input file: -{4} - """.format(family_name, entry, correctAtom, index+1, entry.item.toAdjacencyList())) - - def kinetics_checkUnimolecularGroups(self,family_name): - """ - This test goes through all unimolecular groups that have more than one top level, top level groups - that overlap with family.reactant are assumed to be backbones(contains the whole reactant molecule) - and the other top levels are assumedto be endgroups - - the following are format requirements are checked: - 1)endgroup entries hav exactly the same labels as their top level entry - 2)backbone groups have all labels that endgroups have - 3)backbone groups have labels tracing between the endgroups that follow the shortest path - 4)The end subgraph inside each backbone is exactly the same as the top level of the correspodning end tree - """ - - def getEndFromBackbone(backbone, endLabels): - """ - :param backbone: :class: Entry for a backbone of molecule - :param endLabels: Labels in the end groups - :return: A subgraph representing the end group of the molecule - """ - #make copy for manipulation - copyGroup = backbone.item.copy(True) - - #Find the endGroup atoms - for atom in copyGroup.atoms: - if atom.label in endLabels: - midAtom = atom - break - - #find the bonds to break - bondsToBreak = [] - for atom2, bond in midAtom.bonds.iteritems(): - if atom2.label is None or atom2.label not in endLabels: # - bondsToBreak.append(bond) - - - for bond in bondsToBreak: - copyGroup.removeBond(bond) - - #split group into end and backbone fragment - groups = copyGroup.split() - - #verify group was split correctly and identify the correct end group - endLabels = set(endLabels) - for group in groups: - groupLabels = set(atom.label for atom in group.atoms) - groupLabels.discard('') - if endLabels == groupLabels: - break - else: - print(endLabels) - print(groupLabels) - for group in groups: - print(group.toAdjacencyList(label=backbone.label)) - raise Exception("Group {0} not split correctly".format(backbone.label)) - - return group - ################################################################################# - family = self.database.kinetics.families[family_name] - print family - - backbone = family.getBackboneRoots()[0] - - endGroups = family.getEndRoots() - - endLabels = {} - for endGroup in endGroups: - labels = [] - for atom in endGroup.item.atoms: - if atom.label: - labels.append(atom.label) - endLabels[endGroup] = set(labels) - - #get boundary atoms to test that backbones have labels between end groups - nose.tools.assert_is_not_none(family.boundaryAtoms) - - # set of all end_labels should be backbone label - backboneLabel = set([]) - for end, end_label in endLabels.iteritems(): - for label in end_label: - backboneLabel.add(label) - - #define types of errors - A = [] #end groups have too many labels - B = [] #end group lacks necessary label - C = [] #backbone missing end group labels - D = [] #backbone missing labels in between groups - E = [] #backbone tries to define atoms inside end groups - for group_name, entry in family.groups.entries.iteritems(): - if isinstance(entry.item, Group): - group = entry.item - if backbone in family.ancestors(entry): - for atom in group.atoms: - if atom.label: presentLabels.add(atom.label) - #Check C - for endGroup, labels in endLabels.iteritems(): - if not labels.issubset(presentLabels): - C.append([endGroup, entry]) - #check D - midAtoms = [group.getLabeledAtom(x) for x in family.boundaryAtoms] - pathAtoms = find_shortest_path(midAtoms[0], midAtoms[1]) - for atom in pathAtoms: - if not atom.label: - D.append([backbone, entry]) - break - #check E - for endGroup, labels in endLabels.iteritems(): - endFromBackbone = getEndFromBackbone(entry, labels) - presentLabels = endFromBackbone.getLabeledAtoms() - presentLabels = set(presentLabels.keys()) - if labels == presentLabels: - if not endGroup.item.isIdentical(endFromBackbone): - E.append([endGroup, entry]) - else: raise Exception("Group {0} has split into end group {1}, but does not match any root".format(entry.label, endFromBackbone.toAdjacencyList())) - - else: - presentLabels = set([]) - for endNode, labelledAtoms in endLabels.iteritems(): - if endNode in family.ancestors(entry): - for atom in group.atoms: - if atom.label: presentLabels.add(atom.label) - #Check A - if not presentLabels.issubset(labelledAtoms): - A.append([endNode, entry]) - #Check B - if not labelledAtoms.issubset(presentLabels): - B.append([endNode, entry]) - - - #print outputs - if A != []: - s = "These end groups have extra labels that their top level end group do not have:"+"\n [root group, error group]" - for x in A: - s += '\n'+str(x) - nose.tools.assert_true(False,s) - if B != []: - s = "These end groups are missing labels that their top level end group have:"+"\n [root group, error group]" - for x in B: - s += '\n'+str(x) - nose.tools.assert_true(False,s) - if C != []: - s = "These backbone groups are missing labels that are in the end groups:"+"\n [root group, error group]" - for x in C: - s += '\n'+str(x) - nose.tools.assert_true(False,s) - if D != []: - s = "These backbone groups are missing labels along the path atoms:"+"\n [root group, error group]" - for x in D: - s += '\n'+str(x) - nose.tools.assert_true(False,s) - if E != []: - s = "These backbone have end subgraphs that don't match a root:"+"\n [root group, error group]" - for x in E: - s += '\n'+str(x) - nose.tools.assert_true(False,s) - - def kinetics_checkSampleDescendsToGroup(self, family_name): - """ - This test first creates a sample :class:Molecule from a :class:Group. Then it checks - that this molecule hits the original group or a child when it descends down the tree. - """ - family = self.database.kinetics.families[family_name] - - #ignore any products - ignore=[] - if not family.ownReverse: - for product in family.forwardTemplate.products: - ignore.append(product) - ignore.extend(product.children) - else: ignore=[] - - #If family is backbone archetype, then we need to merge groups before descending - roots = family.groups.top - if len(roots) > len(family.forwardTemplate.reactants): - backboneRoots = family.getBackboneRoots() - allBackboneGroups = [] - for backboneRoot in backboneRoots: - allBackboneGroups.extend(family.getTopLevelGroups(backboneRoot)) - #list of numbered of labelled atoms for allBackboneGroups - backboneSizes = [len(backbone.item.getLabeledAtoms()) for backbone in allBackboneGroups] - - #pick a backbone that is two labelled atoms larger than the smallest - if min(backboneSizes) + 2 in backboneSizes: - backboneSample = allBackboneGroups[backboneSizes.index(min(backboneSizes) + 2)] - #or if it doesn't exist, pick the largest backbone - else: - backboneSample = allBackboneGroups[backboneSizes.index(max(backboneSizes))] - mergesNecessary = True - else: mergesNecessary = False - - #If atom has too many benzene rings, we currently have trouble making sample atoms - skipped = [] - - for entryName, entry in family.groups.entries.iteritems(): - if entry in ignore: continue - elif isinstance(entry.item, Group): - print entryName - ancestors=family.ancestors(entry) - if ancestors: root = ancestors[-1] #top level root will be last one in ancestors - else: root = entry - try: - if mergesNecessary and root not in backboneRoots: #we may need to merge - mergedGroup = family.mergeGroups(backboneSample.item, entry.item) - sampleMolecule = mergedGroup.makeSampleMolecule() - else: - sampleMolecule = entry.item.makeSampleMolecule() - - #for now ignore sample atoms that use nitrogen types - nitrogen = False - for atom in sampleMolecule.atoms: - if atom.isNitrogen(): nitrogen = True - if nitrogen: - skipped.append(entryName) - continue - - #test accessibility here - atoms = sampleMolecule.getLabeledAtoms() - match = family.groups.descendTree(sampleMolecule, atoms, strict=True, root = root) - nose.tools.assert_in(entry, [match]+family.groups.ancestors(match), """In group {0}, a sample molecule made from node {1} returns node {2} when descending the tree. -Sample molecule AdjList: -{3} - -Origin Group AdjList: -{4}{5}{6} - -Matched group AdjList: -{7} - """.format(family_name, - entry.label, - match.label, - sampleMolecule.toAdjacencyList(), - entry.item.toAdjacencyList(), - "\n\nBackbone Group Adjlist:\n" + backboneSample.label +'\n' if mergesNecessary and root not in backboneRoots else '', - backboneSample.item.toAdjacencyList() if mergesNecessary and root not in backboneRoots else '', - match.item.toAdjacencyList())) - - except UnexpectedChargeError, e: - nose.tools.assert_true(False, """In family {0}, a sample molecule made from node {1} returns an unexpectedly charged molecule: -Sample molecule AdjList: -{2} - -Origin Group AdjList: -{3}{4}{5}""".format(family_name, - entry.label, - e.graph.toAdjacencyList(), - entry.item.toAdjacencyList(), - "\n\nBackbone Group Adjlist:\n" + backboneSample.label +'\n' if mergesNecessary and root not in backboneRoots else '', - backboneSample.item.toAdjacencyList() if mergesNecessary and root not in backboneRoots else '') - ) - - except ImplicitBenzeneError: - skipped.append(entryName) - - #print out entries skipped from exception we can't currently handle - if skipped: - print "These entries were skipped because too big benzene rings or has nitrogen sample atom:" - for entryName in skipped: - print entryName - - def general_checkNodesFoundInTree(self, group_name, group): - """ - This test checks whether nodes are found in the tree, with proper parents. - """ - for nodeName, nodeGroup in group.entries.iteritems(): - ascendParent = nodeGroup - # Check whether the node has proper parents unless it is the top reactant or product node - while ascendParent not in group.top: - child = ascendParent - ascendParent = ascendParent.parent - nose.tools.assert_true(ascendParent is not None, "Node {node} in {group} group was found in the tree without a proper parent.".format(node=child, group=group_name)) - nose.tools.assert_true(child in ascendParent.children, "Node {node} in {group} group was found in the tree without a proper parent.".format(node=nodeName, group=group_name)) - nose.tools.assert_false(child is ascendParent, "Node {node} in {group} is a parent to itself".format(node=nodeName, group=group_name)) - - def general_checkGroupsNonidentical(self, group_name, group): - """ - This test checks whether nodes found in the group are nonidentical. - """ - entriesCopy = copy(group.entries) - for nodeName, nodeGroup in group.entries.iteritems(): - del entriesCopy[nodeName] - for nodeNameOther, nodeGroupOther in entriesCopy.iteritems(): - try: - group.matchNodeToNode(nodeGroup,nodeGroupOther) - except: - print nodeName - print nodeNameOther - pass - nose.tools.assert_false(group.matchNodeToNode(nodeGroup, nodeGroupOther), "Node {node} in {group} group was found to be identical to node {nodeOther}".format(node=nodeName, group=group_name, nodeOther=nodeNameOther)) - - def general_checkChildParentRelationships(self, group_name, group): - """ - This test checks that nodes' parent-child relationships are correct in the database. - """ - for nodeName, childNode in group.entries.iteritems(): - #top nodes and product nodes don't have parents by definition, so they get an automatic pass: - if childNode in group.top: continue - parentNode = childNode.parent - # Check whether the node has proper parents unless it is the top reactant or product node - # The parent should be more general than the child - nose.tools.assert_true(group.matchNodeToChild(parentNode, childNode), - "In {group} group, node {parent} is not a proper parent of its child {child}.".format(group=group_name, parent=parentNode, child=nodeName)) - - #check that parentNodes which are LogicOr do not have an ancestor that is a Group - #If it does, then the childNode must also be a child of the ancestor - if isinstance(parentNode.item, LogicOr): - ancestorNode = parentNode - while ancestorNode not in group.top and isinstance(ancestorNode.item, LogicOr): - ancestorNode = ancestorNode.parent - if isinstance(ancestorNode.item, Group): - nose.tools.assert_true(group.matchNodeToChild(ancestorNode, childNode), - "In {group} group, node {ancestor} is not a proper ancestor of its child {child}.".format(group=group_name, ancestor=ancestorNode, child=nodeName)) - - def general_checkSiblingsForParents(self, group_name, group): - """ - This test checks that siblings in a tree are not actually parent/child. - - For example in a tree: - - L1. A - L2. B - L2. C - - This tests that C is not a child of B, which would make C inaccessible because - we always match B first. - - We do not check that B is not a child of C becausethat does not cause accessibility - problems and may actually be necessary in some trees. For example, in the polycyclic - thermo groups B might be a tricyclic and C a bicyclic parent. Currently there is no - way to writes a bicyclic group that excludes an analogous tricyclic. - """ - for nodeName, node in group.entries.iteritems(): - for index, child1 in enumerate(node.children): - for child2 in node.children[index+1:]: - nose.tools.assert_false(group.matchNodeToChild(child1, child2), - "In {0} group, node {1} is a parent of {2}, but they are written as siblings.".format(group_name, child1, child2)) - def general_checkCdAtomType(self, group_name, group): - """ - This test checks that groups containing Cd, CO, CS and Cdd atomtypes are used - correctly according to their strict definitions - """ - targetLabel=['Cd', 'CO', 'CS', 'Cdd'] - targetAtomTypes=[atomTypes[x] for x in targetLabel] - - for entryName, entry in group.entries.iteritems(): - if isinstance(entry.item, Group): - for index, atom in enumerate(entry.item.atoms): - for atomtype1 in atom.atomType: - if atomtype1 in targetAtomTypes: - break - #If Cd not found in atomTypes, go to next atom - else: continue - #figure out what the correct atomType is - correctAtomList=[] - num_of_Dbonds=sum([1 if x.order[0] is 'D' and len(x.order)==1 else 0 for x in atom.bonds.values()]) - if num_of_Dbonds == 2: - correctAtomList.append('Cdd') - elif num_of_Dbonds == 1: - for ligand, bond in atom.bonds.iteritems(): - #Ignore ligands that are not double bonded - if any([abs(2-order) < 1e-7 for order in bond.order]): - for ligAtomType in ligand.atomType: - if ligand.atomType[0].isSpecificCaseOf(atomTypes['O']): correctAtomList.append('CO') - elif ligand.atomType[0].isSpecificCaseOf(atomTypes['S']): correctAtomList.append('CS') - - #remove duplicates from correctAtom: - correctAtomList=list(set(correctAtomList)) - for correctAtom in correctAtomList: - nose.tools.assert_true(atomTypes[correctAtom] in atom.atomType, - """In group {0}, node {1} is missing the atomtype {2} in atom {3} and may be misusing the atomtype Cd, CO, CS, or Cdd. -The following adjList may have atoms in a different ordering than the input file: -{4} - """.format(group_name, entry, correctAtom, index+1, entry.item.toAdjacencyList())) - - def general_checkSampleDescendsToGroup(self, group_name, group): - """ - This test first creates a sample :class:Molecule from a :class:Group. Then it checks - that this molecule hits the original group or a child when it descends down the tree. - """ - - skipped = [] - for entryName, entry in group.entries.iteritems(): - print entryName - try: - if isinstance(entry.item, Group): - # print entryName - sampleMolecule = entry.item.makeSampleMolecule() - - #for now ignore sample atoms that use nitrogen types - nitrogen = False - for atom in sampleMolecule.atoms: - if atom.isNitrogen(): nitrogen = True - if nitrogen: - skipped.append(entryName) - continue - - atoms = sampleMolecule.getLabeledAtoms() - match = group.descendTree(sampleMolecule, atoms, strict=True) - - assert entry in [match]+group.ancestors(match), """In group {0}, a sample molecule made from node {1} returns node {2} when descending the tree. -Sample molecule AdjList: -{3} - -Origin Group AdjList: -{4} - -Matched group AdjList: -{5} -""".format(group_name, - entry, - match, - sampleMolecule.toAdjacencyList(), - entry.item.toAdjacencyList(), - match.item.toAdjacencyList()) - except UnexpectedChargeError, e: - nose.tools.assert_true(False, """In family {0}, a sample molecule made from node {1} returns an unexpectedly charged molecule: -Sample molecule AdjList: -{2} - -Origin Group AdjList: -{3}""".format(group_name, - entry.label, - e.graph.toAdjacencyList(), - entry.item.toAdjacencyList())) - - except ImplicitBenzeneError: - skipped.append(entryName) - - #print out entries skipped from exception we can't currently handle - if skipped: - print "These entries were skipped because too big benzene rings or has nitrogen sample atom:" - for entryName in skipped: - print entryName - -if __name__ == '__main__': - nose.run(argv=[__file__, '-v', '--nologcapture'], defaultTest=__name__)