diff --git a/ecobidas/inputs/neurovault/neurovault.tsv b/ecobidas/inputs/neurovault/neurovault.tsv index b73c3998..3ec3d248 100644 --- a/ecobidas/inputs/neurovault/neurovault.tsv +++ b/ecobidas/inputs/neurovault/neurovault.tsv @@ -1,88 +1,88 @@ activity_pref_label activity_order item_order question unit details field_type choices item item_pref_label visibility validation item_description include mandatory preamble bids_status bids_file bids_key bids_key_for_unit UUID -Experimental design 1 1 Type of design select blocked | event_related | hybrid block/event type_of_design type of design 1 type of design 1 1 Describe your experimental design 5f49e6f7-d89a-425a-8c82-c23227d511e9 -Experimental design 1 2 Number of imaging runs acquired integer 0 number of imaging runs 1 number of imaging runs 1 2 8d993091-6d9a-4e67-82be-c1dffd5341b8 -Experimental design 1 3 Number of blocks, trials or experimental units per imaging run integer 0 number of experimental units 1 number of experimental units 1 2 6a5da0c8-c774-42a6-8786-8d660e4a7f17 -Experimental design 1 4 Length of each imaging run seconds float 0 length of runs 1 length of runs 1 2 9a2dea63-f965-4678-ac63-ded9a3ef662a -Experimental design 1 5 For blocked designs, length of blocks seconds float 0 length of blocks type_of_design in [0, 2] length of blocks 1 2 ba7e3820-5747-4179-9960-6d163c9495ee -Experimental design 1 6 Length of individual trials seconds float 0 length of trials 1 length of trials 1 2 3751d7dc-f033-4710-ba8e-80e2970709ef -Experimental design 1 7 Was the design optimized for efficiency? radio preset:boolean optimization 1 optimization 1 2 a74d9633-5ae2-4127-b3af-b7a5bf39f593 -Experimental design 1 8 What method was used for optimization? textarea optimization method optimization == 1 optimization method 1 3 be4c5ba2-2701-4122-b5c7-b07174f8c26b -Participants 2 1 Number of subjects entering into the analysis integer 0 number of subjects 1 number of subjects 1 1 Describe your participant sample 96931224-bb67-4036-966a-29681a9a600f -Participants 2 2 Mean age of subjects float 0 | 120 subject_age_mean subject age mean 1 subject age mean 1 1 c47a2073-fc80-44b4-b79f-990d52d035b4 -Participants 2 3 Minimum age of subjects float 0 | 120 subject_age_min subject age min 1 subject_age_min > subject_age_mean, minimum age must be less than mean age subject age min 1 2 0d524a5d-64a2-4feb-90df-cd735ff740bd -Participants 2 4 Maximum age of subjects float 0 | 120 subject_age_max subject age max 1 subject_age_max < subject_age_mean, maximum age must be more than mean age subject age max 1 2 7d75db71-a6f2-48d5-9c08-d2b388412d40 -Participants 2 5 Handedness of subjects radio right | left | both handedness 1 handedness 1 2 b545ad14-26b4-4e02-abd3-a4cb50c34b84 -Participants 2 6 The proportion of subjects who were male float 0 | 1 proportion male subjects 1 proportion male subjects 1 2 2c131b71-df35-4c47-9bf3-f4363912abce -Participants 2 7 Additional inclusion/exclusion criteria, if any. Including specific sampling strategies that limit inclusion to a specific group, such as laboratory members. textarea inclusion exclusion criteria 1 inclusion exclusion criteria 1 3 b10dbc99-ec74-4f25-87cd-45fdbba5af8a -Participants 2 8 Number of subjects scanned but rejected from analysis integer 0 number of rejected subjects 1 number of rejected subjects 1 2 fcedde9a-986b-4efd-a0a7-b20495a5b7d0 -Participants 2 9 Was this study a comparison between subject groups? radio preset:boolean group comparison 1 group comparison 1 1 980dda7c-c5d0-4f05-8336-79af1e15e57c -Participants 2 10 A description of the groups being compared textarea group description group_comparison == 1 group description 1 2 5d470c8a-5925-44e8-af7e-3c64de3899a8 -MRI acquisition 3 1 Manufacturer of MRI scanner select Siemens | Philips | General Electric | other Manufacturer scanner make 1 scanner make 1 1 Describe your acquisition parameters 03687a74-6693-4fd8-801e-b6a819d60652 -MRI acquisition 3 2 Model of MRI scanner textarea ManufacturersModelName scanner model 1 scanner model 1 1 4309a974-4f66-423e-aced-4ec0de0e9114 -MRI acquisition 3 3 Field strength of MRI scanner Tesla float 0 | 20 MagneticFieldStrength field strength 1 field strength 1 1 019d1bb3-b4a2-487e-befd-8fb336af230c -MRI acquisition 3 4 Description of pulse sequence used for fMRI select Gradient echo | Spin echo | Mutliband gradient echo | MPRAGE | MP2RAGE | FLASH | other PulseSequenceType pulse sequence 1 pulse sequence 1 1 a64de113-7926-4c04-bd4d-e660354ab728 -MRI acquisition 3 5 Description of parallel imaging method and parameters textarea parallel imaging 1 parallel imaging 1 3 b47c0e8a-e540-4d24-afbf-532e1bc63972 -MRI acquisition 3 6 Imaging field of view Millimeters float field of view 1 field of view 1 2 3ed67554-32d3-4ffb-8065-0d7e081609c6 -MRI acquisition 3 7 Matrix size for MRI acquisition integer matrix size 1 matrix size 1 2 b2059a75-03ca-4105-9f6b-1c15d48c146a -MRI acquisition 3 8 Distance between slices (includes skip or distance factor). Millimeters float 0 slice thickness 1 slice thickness 1 1 56dae73a-5ca2-4e57-a82c-49e8e006a665 -MRI acquisition 3 9 The size of the skipped area between slices. Millimeters float 0 skip factor 1 skip factor 1 2 b6110941-9fe5-4646-8d9f-6f88199c0fff -MRI acquisition 3 10 The orientation of slices radio axial | sagittal | frontal acquisition orientation 1 acquisition orientation 1 2 a48e252d-9f08-4f00-aa47-6e996caaf2e3 -MRI acquisition 3 11 Order of acquisition of slices select ascending | descending | interleaved SliceTiming order of acquisition 1 order of acquisition 1 3 836d855a-9fcb-410f-9c42-0cc4400facc7 -MRI acquisition 3 12 Repetition time (TR) Milliseconds float 0 RepetitionTime repetition time 1 repetition time 1 1 247815b3-fc87-49af-ad97-21ae8b198c17 -MRI acquisition 3 13 Echo time (TE) Milliseconds float 0 EchoTime echo time 1 echo time 1 1 05b2abdb-95ed-49b6-a1c1-57db7726b3f1 -MRI acquisition 3 14 Flip angle Degrees float 0 FlipAngle flip angle 1 flip angle 1 2 93e2b351-ac07-4e55-b687-a8c8dcb3468e -Preprocessing 4 1 If a single software package was used for all analyses, specify that here select preset:mri_softwares SoftwareName software package 1 software package 1 1 Describe your preprocessing 82959d50-ef2e-4466-8f27-b49f7d90e034 -Preprocessing 4 2 Version of software package used textarea SoftwareVersion software version 1 software version 1 1 193f35b6-0471-451a-be63-9d338e335410 -Preprocessing 4 3 Specify order of preprocessing operations textarea order of preprocessing operations 1 order of preprocessing operations 1 2 e422d665-5fca-4d47-9172-5d6d6c3e0bb6 -Preprocessing 4 4 Describe quality control measures textarea quality control 1 quality control 1 3 b31532d6-5129-4c5e-aaa3-d94ebbc71928 -Preprocessing 4 5 Was B0 distortion correction used? radio preset:boolean used b0 unwarping 1 used b0 unwarping 1 2 9671667b-8650-42fd-9439-e0b961b5678d -Preprocessing 4 6 Specify software used for distortion correction if different from the main package select preset:mri_softwares b0 unwarping software used_b0_unwarping == 1 b0 unwarping software 1 3 7542fb15-c8dc-4228-8b69-f092b7b674b5 -Preprocessing 4 7 Was slice timing correction used? radio preset:boolean used slice timing correction 1 used slice timing correction 1 1 ab041aff-5873-4447-b737-462c8b6f88f9 -Preprocessing 4 8 Specify software used for slice timing correction if different from the main package select preset:mri_softwares slice timing correction software used_slice_timing_correction == 1 slice timing correction software 1 3 3362e178-8120-40b2-9dbe-cb0c7869b262 -Preprocessing 4 9 Was motion correction used? radio preset:boolean used motion correction 1 used motion correction 1 1 1f085b72-7afc-487e-aea0-23f19396ce70 -Preprocessing 4 10 Specify software used for motion correction if different from the main package select preset:mri_softwares motion correction software used_motion_correction == 1 motion correction software 1 3 36594fc8-01dd-4211-82d7-de48752ce91d -Preprocessing 4 11 Reference scan used for motion correction textarea motion correction reference used_motion_correction == 1 motion correction reference 1 3 832f3af1-6389-4df5-80af-ccb1310a3dbf -Preprocessing 4 12 Similarity metric used for motion correction select preset:cost_functions motion correction metric used_motion_correction == 1 motion correction metric 1 3 292b2965-9a9b-494d-a6f6-90a383cb1abc -Preprocessing 4 13 Interpolation method used for motion correction select preset:interpolations motion correction interpolation used_motion_correction == 1 motion correction interpolation 1 3 f88a6891-ee75-4bc2-be06-7f49b46f2302 -Preprocessing 4 14 Was motion-susceptibility correction used? radio preset:boolean used motion susceptibiity correction 1 used motion susceptibiity correction 1 3 3407426a-b933-4907-819c-5c73fe129226 -Intersubject registration 5 1 Were subjects registered to a common stereotactic space? radio preset:boolean used intersubject registration 1 used intersubject registration 1 1 Describe your spatial normalization 4711975f-2a8d-44cc-9f4e-e64ee98e0f19 -Intersubject registration 5 2 Specify software used for intersubject registration if different from main package select preset:mri_softwares intersubject registration software used_intersubject_registration == 1 intersubject registration software 1 2 9016bdf7-8e87-4ff7-afab-e4f86c723f1c -Intersubject registration 5 3 Was linear or nonlinear registration used? select linear | non-linear intersubject transformation type used_intersubject_registration == 1 intersubject transformation type 1 1 461b7965-4a11-4d17-8759-f95ef75edffa -Intersubject registration 5 4 If nonlinear registration was used, describe transform method textarea nonlinear transform type used_intersubject_registration == 1 and nonlinear_transform_type == 1 nonlinear transform type 1 2 d39e824b-9a49-4a40-8b7f-ab340def8327 -Intersubject registration 5 5 Similarity metric used for intersubject registration textarea transform similarity metric used_intersubject_registration == 1 transform similarity metric 1 3 b1b8645e-226f-455a-b670-7bbe71d9b413 -Intersubject registration 5 6 Interpolation method used for intersubject registration select preset:interpolations interpolation method used_intersubject_registration == 1 interpolation method 1 2 bbad1e21-2038-46f1-9c81-842ef6d0ed24 -Intersubject registration 5 7 What type of image was used to determine the transformation to the atlas? textarea object image type used_intersubject_registration == 1 object image type 1 1 96409139-c354-4d40-876d-83fb2ba07b86 -Intersubject registration 5 8 Were the functional images coregistered to the subject's structural image? radio preset:boolean functional coregistered to structural 1 functional coregistered to structural 1 2 7d83b2b0-63ce-44fb-a916-b18e8de7304a -Intersubject registration 5 9 Method used to coregister functional to structural images textarea functional coregistration method functional_coregistered_to_structural == 1 functional coregistration method 1 3 769faf6a-ce83-4e58-bc55-c4a7b9213440 -Intersubject registration 5 10 Name of coordinate space for registration target select MNI | Talairach | MNI2Tal | other coordinate space 1 coordinate space 1 1 a7716bb4-faee-4b04-85fd-e45ea4463bc1 -Intersubject registration 5 11 Name of target template image textarea target template image 1 target template image 1 2 bdf40cd2-b8db-48b7-8672-c7a012c6c5af -Intersubject registration 5 12 Voxel size of target template Millimeters float 0 target resolution 1 target resolution 1 1 e0802e6c-5060-490a-b39d-70363f49e4d8 -Intersubject registration 5 13 Was spatial smoothing applied? radio preset:boolean used smoothing 1 used smoothing 1 1 88c9800f-70aa-4bea-a79b-476b0c4322d0 -Intersubject registration 5 14 Describe the type of smoothing applied textarea smoothing type used_smoothing == 1 smoothing type 1 1 2a58580a-1930-43b5-a576-4a71e284692d -Intersubject registration 5 15 The full-width at half-maximum of the smoothing kernel Millimeters float 0 smoothing fwhm used_smoothing == 1 smoothing fwhm 1 1 93bb9f27-302b-45bd-8d4e-723de5a8626d -Intersubject registration 5 16 Voxel size in mm of the resampled, atlas-space images float 0 resampled voxel size 1 resampled voxel size 1 1 272b3c91-144b-48b8-be08-854938771eb2 -Individual subject modeling 6 1 Type of group model used radio Regression | other intrasubject model type 1 intrasubject model type 1 1 Describe your model specification at the subejct level 58d9c404-0e00-41d3-a479-fd9cacf8a934 -Individual subject modeling 6 2 Estimation method used for model select ordinary least squares | generalized least squares | other intrasubject estimation type 1 intrasubject estimation type 1 1 34e453f6-6a13-44c7-a6fa-83826d3a9c00 -Individual subject modeling 6 3 Software used for intrasubject modeling if different from overall package select preset:mri_softwares intrasubject modeling software 1 intrasubject modeling software 1 2 3d94e8a8-ad8b-4229-9ffc-b4df29a81b65 -Individual subject modeling 6 4 Nature of HRF model select spm HRF | glover HRF | double gamma | Fourrier set | Finite Impulse Response | FLOBS | other hemodynamic response function 1 hemodynamic response function 1 2 d6cec9a0-f216-4fb1-84a0-8b5c937788e2 -Individual subject modeling 6 5 Were temporal derivatives included? radio preset:boolean used temporal derivatives 1 used temporal derivatives 1 2 00416700-7b70-493b-b589-125fbc86b59c -Individual subject modeling 6 6 Were dispersion derivatives included? radio preset:boolean used dispersion derivatives 1 used dispersion derivatives 1 3 58546f5f-029d-41e2-9f2d-aefe28cb0ea3 -Individual subject modeling 6 7 Were motion regressors included? radio preset:boolean used motion regressors 1 used motion regressors 1 2 6e0f0323-cec9-4a32-9063-6041c879dbbe -Individual subject modeling 6 8 Was a reaction time regressor included? radio preset:boolean used reaction time regressor 1 used reaction time regressor 1 2 1632ddc2-bba1-448b-a561-1e8bf889186f -Individual subject modeling 6 9 Were any regressors specifically orthogonalized with respect to others? radio preset:boolean used orthogonalization 1 used orthogonalization 1 1 59ea4fd0-cfbd-42d6-b78c-0c34dca388e6 -Individual subject modeling 6 10 If orthogonalization was used, describe here textarea orthogonalization description used_orthogonalization == 1 orthogonalization description 1 2 5d3a44b3-3e03-4577-9926-53d4e225ec38 -Individual subject modeling 6 11 Was high pass filtering applied? radio preset:boolean used high pass filter 1 used high pass filter 1 1 5f28abca-0592-4d8d-9532-04ee9ad94bb6 -Individual subject modeling 6 12 Describe method used for high pass filtering textarea high pass filter method used_high_pass_filter == 1 high pass filter method 1 2 c186ca84-4430-4528-ad5f-511acce9fe2a -Individual subject modeling 6 13 What autocorrelation model was used ? select SPM: global approximate AR(1) | SPM: FAST | FSL: locally regularized autocorrelation function | AFNI: ARMA | none | other autocorrelation model 1 autocorrelation model 1 2 0893960b-91c7-4e54-8f5f-b41f373ae0d8 -Individual subject modeling 6 14 Exactly what terms are subtracted from what? textarea contrast definition 1 contrast definition 1 1 395bd134-a139-4deb-b65b-b78da457e696 -Individual subject modeling 6 15 Link to Cognitive Atlas definition of this contrast Define these in terms of task or stimulus conditions (for example 'one-back task with objects versus zero-back task with objects') instead of underlying psychological concepts (for example 'working memory'). textarea contrast definition cogatlas 1 contrast definition cogatlas 1 3 246f930a-484e-4d70-a664-4ececd631ada -Group modeling 7 1 Type of group model used select Regression group model type 1 group model type 1 1 Describe the group level analysis 274e9db4-2013-4b5f-9c61-954558d1e6a2 -Group modeling 7 2 Estimation method used for model select ordinary least squares | generalized least squares | other group estimation type 1 group estimation type 1 1 abc21c82-11da-42e4-8a01-f1c7aa2e3b77 -Group modeling 7 3 Software used for group modeling if different from overall package select preset:mri_softwares group modeling software 1 group modeling software 1 2 6c85b32a-c968-4f69-bf82-30ec303d5ee5 -Group modeling 7 4 Type of inference for group model select random effect | mixed effect | fixed effect group inference type 1 group inference type 1 1 117599dc-d036-49f3-bd0d-d1a18ac804db -Group modeling 7 5 If more than 2-levels, describe the levels and assumptions of the model. For example, are variances assumed equal between groups. textarea group model multilevel 1 group model multilevel 1 3 c1d62989-9d2a-4947-8731-7dfd9b06fb4f -Group modeling 7 6 Was this a repeated measures design at the group level? radio preset:boolean group repeated measures 1 group repeated measures 1 1 9d52c2b1-84db-4151-89de-c3ce1d51288d -Group modeling 7 7 If multiple measurements per subject, list method to account for within subject correlation, exact assumptions made about correlation/variance textarea group repeated measures method group_repeated_measures == 1 group repeated measures method 1 3 5ecb4cfd-88ed-4cfb-9368-a5fe30d1e12f -Group inference 8 1 Type of statistic that is the basis of the inference select Z | T | F | X2 | PostProb | Non-parametric Permutations | Monte Carlo Permutations | other group statistic type 1 group statistic type 1 2 Describe your statistical inference 54fb8092-087f-4a6c-b433-bad80e6a85f2 -Group inference 8 2 Parameters of the null distribution of the test statisic. Typically degrees of freedom (should be clear from the test statistic what these are). float group statistic parameters 1 group statistic parameters 1 1 30c1374b-3087-418e-8ba7-afc5c48f3c12 -Group inference 8 3 Noise smoothness for statistical inference This is the estimated smoothness used with Random Field Theory or a simulation-based inference method. float 0 group smoothness fwhm 1 group smoothness fwhm 1 1 9d9b6e18-4ea8-472e-a148-793749f6704a +Experimental design 1 1 Type of design select blocked | event_related | hybrid block/event type_of_design type of design 1 type of design 1 1 Describe your experimental design 57f753ef-9293-4ff6-98a9-6f2cec909d3b +Experimental design 1 2 Number of imaging runs acquired integer 0 number of imaging runs 1 number of imaging runs 1 2 7a2ac3f4-f32b-4dcb-bbb6-f7978f7145c9 +Experimental design 1 3 Number of blocks, trials or experimental units per imaging run integer 0 number of experimental units 1 number of experimental units 1 2 4b7190c9-6724-4957-9140-945dc814b453 +Experimental design 1 4 Length of each imaging run seconds float 0 length of runs 1 length of runs 1 2 6d8a0828-39f1-4d3c-b2a2-92d2a6357171 +Experimental design 1 5 For blocked designs, length of blocks seconds float 0 length of blocks type_of_design in [0, 2] length of blocks 1 2 59247d6c-f2c0-4e07-86ed-2197bcb97d17 +Experimental design 1 6 Length of individual trials seconds float 0 length of trials 1 length of trials 1 2 b4ad4ef8-a1fc-4819-9754-d24ae060c3e6 +Experimental design 1 7 Was the design optimized for efficiency? radio preset:boolean optimization 1 optimization 1 2 564aa1c5-3ca6-40ed-9d5f-7d1e36e84d3b +Experimental design 1 8 What method was used for optimization? textarea optimization method optimization == 1 optimization method 1 3 872ab721-76e2-4664-a85d-0d5ee2992ee3 +Participants 2 1 Number of subjects entering into the analysis integer 0 number of subjects 1 number of subjects 1 1 Describe your participant sample fc33835c-bac1-4d66-88c5-e2bbd229b222 +Participants 2 2 Mean age of subjects float 0 | 120 subject_age_mean subject age mean 1 subject age mean 1 1 f09f15b6-41fd-4ce7-bfd9-12dbb1dd9329 +Participants 2 3 Minimum age of subjects float 0 | 120 subject_age_min subject age min 1 subject_age_min > subject_age_mean, minimum age must be less than mean age subject age min 1 2 612cff2f-df27-42b4-8996-f3dabcc8a693 +Participants 2 4 Maximum age of subjects float 0 | 120 subject_age_max subject age max 1 subject_age_max < subject_age_mean, maximum age must be more than mean age subject age max 1 2 5f2c250b-28bc-455c-ab88-16dad27c1647 +Participants 2 5 Handedness of subjects radio right | left | both handedness 1 handedness 1 2 689eb199-e202-4ddf-aba9-0b19333461fd +Participants 2 6 The proportion of subjects who were male float 0 | 1 proportion male subjects 1 proportion male subjects 1 2 25825114-a665-4abd-b562-e5904ce573d7 +Participants 2 7 Additional inclusion/exclusion criteria, if any. Including specific sampling strategies that limit inclusion to a specific group, such as laboratory members. textarea inclusion exclusion criteria 1 inclusion exclusion criteria 1 3 00444bd1-246c-4ab0-a609-6d2be7c3c162 +Participants 2 8 Number of subjects scanned but rejected from analysis integer 0 number of rejected subjects 1 number of rejected subjects 1 2 1b1486ac-800b-479b-9ef4-86283c275570 +Participants 2 9 Was this study a comparison between subject groups? radio preset:boolean group comparison 1 group comparison 1 1 5209adb9-873b-49ab-a553-218912b0ff16 +Participants 2 10 A description of the groups being compared textarea group description group_comparison == 1 group description 1 2 03f13685-5645-4485-9cc1-dab0c6bbe182 +MRI acquisition 3 1 Manufacturer of MRI scanner select Siemens | Philips | General Electric | other Manufacturer scanner make 1 scanner make 1 1 Describe your acquisition parameters 3a92508d-7091-4d1a-b3fb-ef27f7bc9243 +MRI acquisition 3 2 Model of MRI scanner textarea ManufacturersModelName scanner model 1 scanner model 1 1 98c08973-4e77-4cf6-a8d1-c3ea40c7df53 +MRI acquisition 3 3 Field strength of MRI scanner Tesla float 0 | 20 MagneticFieldStrength field strength 1 field strength 1 1 58caf5d1-e16a-4616-aaaf-7d4ce13c5666 +MRI acquisition 3 4 Description of pulse sequence used for fMRI select Gradient echo | Spin echo | Mutliband gradient echo | MPRAGE | MP2RAGE | FLASH | other PulseSequenceType pulse sequence 1 pulse sequence 1 1 ba86a167-89e8-4bd0-a58c-9c249ddae99c +MRI acquisition 3 5 Description of parallel imaging method and parameters textarea parallel imaging 1 parallel imaging 1 3 8414b4e1-7567-42f4-8623-1fd5214eb02a +MRI acquisition 3 6 Imaging field of view Millimeters float field of view 1 field of view 1 2 81563bc5-7e1f-469e-b1cf-6fc74823470c +MRI acquisition 3 7 Matrix size for MRI acquisition integer matrix size 1 matrix size 1 2 2c58ad43-be0b-4e92-b8d0-82ae172aa2e3 +MRI acquisition 3 8 Distance between slices (includes skip or distance factor). Millimeters float 0 slice thickness 1 slice thickness 1 1 5e8f2a5a-cc71-4f0c-ab22-df65bfa31dc2 +MRI acquisition 3 9 The size of the skipped area between slices. Millimeters float 0 skip factor 1 skip factor 1 2 74d810f3-140a-4644-a0f6-18176e8c11db +MRI acquisition 3 10 The orientation of slices radio axial | sagittal | frontal acquisition orientation 1 acquisition orientation 1 2 ccd39ae9-e441-4756-a8de-aa8a8e69c4ee +MRI acquisition 3 11 Order of acquisition of slices select ascending | descending | interleaved SliceTiming order of acquisition 1 order of acquisition 1 3 6bbe5e51-5058-48ac-a6da-665df7c6db77 +MRI acquisition 3 12 Repetition time (TR) Milliseconds float 0 RepetitionTime repetition time 1 repetition time 1 1 f87856f8-acf5-4527-9e27-2960e5e30321 +MRI acquisition 3 13 Echo time (TE) Milliseconds float 0 EchoTime echo time 1 echo time 1 1 049a4b20-9970-4dfc-b9b3-c4db06111b72 +MRI acquisition 3 14 Flip angle Degrees float 0 FlipAngle flip angle 1 flip angle 1 2 79fc4ffa-16eb-4555-a89d-b1c9c632923d +Preprocessing 4 1 If a single software package was used for all analyses, specify that here select preset:mri_softwares SoftwareName software package 1 software package 1 1 Describe your preprocessing 44394013-a0fb-43d3-8620-847d5d3e69c5 +Preprocessing 4 2 Version of software package used textarea SoftwareVersion software version 1 software version 1 1 e1934e85-d925-4891-bbb8-0610e9f7923b +Preprocessing 4 3 Specify order of preprocessing operations textarea order of preprocessing operations 1 order of preprocessing operations 1 2 a8263e2b-6211-4189-b8d3-90210551cc41 +Preprocessing 4 4 Describe quality control measures textarea quality control 1 quality control 1 3 a078efed-92ff-4d25-8fbd-b1c3451c172e +Preprocessing 4 5 Was B0 distortion correction used? radio preset:boolean used b0 unwarping 1 used b0 unwarping 1 2 150e60e0-34a7-48c8-a3e7-02a53c0301aa +Preprocessing 4 6 Specify software used for distortion correction if different from the main package select preset:mri_softwares b0 unwarping software used_b0_unwarping == 1 b0 unwarping software 1 3 6083e0c9-533d-471a-b7db-7bd8fdbf92d6 +Preprocessing 4 7 Was slice timing correction used? radio preset:boolean used slice timing correction 1 used slice timing correction 1 1 8a9e9cea-03d1-467f-9c5a-3826f7d904e6 +Preprocessing 4 8 Specify software used for slice timing correction if different from the main package select preset:mri_softwares slice timing correction software used_slice_timing_correction == 1 slice timing correction software 1 3 88f413f5-ead6-4a4f-aa5f-f164d7921fc2 +Preprocessing 4 9 Was motion correction used? radio preset:boolean used motion correction 1 used motion correction 1 1 a85da3d5-0d7d-4c38-b818-83c0e036dd60 +Preprocessing 4 10 Specify software used for motion correction if different from the main package select preset:mri_softwares motion correction software used_motion_correction == 1 motion correction software 1 3 7f0d8012-0f23-4f56-86e5-09e8b028ea84 +Preprocessing 4 11 Reference scan used for motion correction textarea motion correction reference used_motion_correction == 1 motion correction reference 1 3 758a7fd4-c64c-48a7-b20c-60564397e651 +Preprocessing 4 12 Similarity metric used for motion correction select preset:cost_functions motion correction metric used_motion_correction == 1 motion correction metric 1 3 8e966396-9473-4113-8eb2-8eec8f79e80a +Preprocessing 4 13 Interpolation method used for motion correction select preset:interpolations motion correction interpolation used_motion_correction == 1 motion correction interpolation 1 3 4b067d67-2180-454c-b990-e6614f57e42f +Preprocessing 4 14 Was motion-susceptibility correction used? radio preset:boolean used motion susceptibiity correction 1 used motion susceptibiity correction 1 3 4daeec86-d44a-4749-a770-e73aca26a5d3 +Intersubject registration 5 1 Were subjects registered to a common stereotactic space? radio preset:boolean used intersubject registration 1 used intersubject registration 1 1 Describe your spatial normalization 23a25051-381b-4785-8afb-9821f28ab3e8 +Intersubject registration 5 2 Specify software used for intersubject registration if different from main package select preset:mri_softwares intersubject registration software used_intersubject_registration == 1 intersubject registration software 1 2 316d4e86-feeb-48db-881c-0c915f0c66be +Intersubject registration 5 3 Was linear or nonlinear registration used? select linear | non-linear intersubject transformation type used_intersubject_registration == 1 intersubject transformation type 1 1 bc18097f-b0ce-4ed8-9c89-10445d8f9406 +Intersubject registration 5 4 If nonlinear registration was used, describe transform method textarea nonlinear transform type used_intersubject_registration == 1 and nonlinear_transform_type == 1 nonlinear transform type 1 2 99ff65ac-d037-493e-b73f-0eba74768f11 +Intersubject registration 5 5 Similarity metric used for intersubject registration textarea transform similarity metric used_intersubject_registration == 1 transform similarity metric 1 3 b9150319-a348-4e6b-999c-72d874742830 +Intersubject registration 5 6 Interpolation method used for intersubject registration select preset:interpolations interpolation method used_intersubject_registration == 1 interpolation method 1 2 858e04a3-6456-4743-94e8-05adaca316de +Intersubject registration 5 7 What type of image was used to determine the transformation to the atlas? textarea object image type used_intersubject_registration == 1 object image type 1 1 6e52ea84-494a-4d12-b01f-c8ec57754119 +Intersubject registration 5 8 Were the functional images coregistered to the subject's structural image? radio preset:boolean functional coregistered to structural 1 functional coregistered to structural 1 2 352b4007-d841-48d1-981a-50fb4fa3ff4d +Intersubject registration 5 9 Method used to coregister functional to structural images textarea functional coregistration method functional_coregistered_to_structural == 1 functional coregistration method 1 3 3ee48136-08a0-415f-906c-eeaa8ed0d065 +Intersubject registration 5 10 Name of coordinate space for registration target select MNI | Talairach | MNI2Tal | other coordinate space 1 coordinate space 1 1 12232d52-6202-4883-864c-db001ea7e59c +Intersubject registration 5 11 Name of target template image textarea target template image 1 target template image 1 2 f8192cc9-0512-4560-9084-858b74b235b5 +Intersubject registration 5 12 Voxel size of target template Millimeters float 0 target resolution 1 target resolution 1 1 d5d405ba-e75e-47a7-aab2-7cbd772e6f9d +Intersubject registration 5 13 Was spatial smoothing applied? radio preset:boolean used smoothing 1 used smoothing 1 1 1aca58ce-6b95-492b-8d80-bc08fa42eb5c +Intersubject registration 5 14 Describe the type of smoothing applied textarea smoothing type used_smoothing == 1 smoothing type 1 1 9a10b5f0-50d8-40dd-af05-162606a7c198 +Intersubject registration 5 15 The full-width at half-maximum of the smoothing kernel Millimeters float 0 smoothing fwhm used_smoothing == 1 smoothing fwhm 1 1 74cdc91e-9b87-402c-935c-a4c8c90b5c04 +Intersubject registration 5 16 Voxel size in mm of the resampled, atlas-space images float 0 resampled voxel size 1 resampled voxel size 1 1 9a0170a0-e0d4-4ced-9a19-beacf7cf10e9 +Individual subject modeling 6 1 Type of group model used radio Regression | other intrasubject model type 1 intrasubject model type 1 1 Describe your model specification at the subejct level e33f26a6-9c7b-410a-9e9d-34089dccac9f +Individual subject modeling 6 2 Estimation method used for model select ordinary least squares | generalized least squares | other intrasubject estimation type 1 intrasubject estimation type 1 1 b4f3259a-5a6e-498a-bbac-318bdce91bd0 +Individual subject modeling 6 3 Software used for intrasubject modeling if different from overall package select preset:mri_softwares intrasubject modeling software 1 intrasubject modeling software 1 2 7617df21-d2d5-46ab-9881-c7e2b3686058 +Individual subject modeling 6 4 Nature of HRF model select spm HRF | glover HRF | double gamma | Fourrier set | Finite Impulse Response | FLOBS | other hemodynamic response function 1 hemodynamic response function 1 2 1015a3b4-8745-44a6-9f60-865552dc3e32 +Individual subject modeling 6 5 Were temporal derivatives included? radio preset:boolean used temporal derivatives 1 used temporal derivatives 1 2 9bd44742-3c4c-4e87-8cb1-570ad860a564 +Individual subject modeling 6 6 Were dispersion derivatives included? radio preset:boolean used dispersion derivatives 1 used dispersion derivatives 1 3 b880bc40-d280-4ac5-854e-444c8ffeed72 +Individual subject modeling 6 7 Were motion regressors included? radio preset:boolean used motion regressors 1 used motion regressors 1 2 a573b30a-3c91-4565-8cc1-844374465740 +Individual subject modeling 6 8 Was a reaction time regressor included? radio preset:boolean used reaction time regressor 1 used reaction time regressor 1 2 9cbf4e31-97fe-4db3-a8dd-5313e9c5fc39 +Individual subject modeling 6 9 Were any regressors specifically orthogonalized with respect to others? radio preset:boolean used orthogonalization 1 used orthogonalization 1 1 48fd9fbf-e1e8-4f35-9537-a088d0c79512 +Individual subject modeling 6 10 If orthogonalization was used, describe here textarea orthogonalization description used_orthogonalization == 1 orthogonalization description 1 2 afc3d095-2302-4124-a2ce-272688bf7551 +Individual subject modeling 6 11 Was high pass filtering applied? radio preset:boolean used high pass filter 1 used high pass filter 1 1 7f0ad22a-b5fa-4499-9002-088ba2ddfa79 +Individual subject modeling 6 12 Describe method used for high pass filtering textarea high pass filter method used_high_pass_filter == 1 high pass filter method 1 2 db33e964-8720-4927-b20a-1d8912242274 +Individual subject modeling 6 13 What autocorrelation model was used ? select SPM: global approximate AR(1) | SPM: FAST | FSL: locally regularized autocorrelation function | AFNI: ARMA | none | other autocorrelation model 1 autocorrelation model 1 2 4bed449a-f7d7-435f-8205-c2199f83b96b +Individual subject modeling 6 14 Exactly what terms are subtracted from what? textarea contrast definition 1 contrast definition 1 1 818802c4-f4a1-48eb-a659-b0857fa5ea6c +Individual subject modeling 6 15 Link to Cognitive Atlas definition of this contrast Define these in terms of task or stimulus conditions (for example 'one-back task with objects versus zero-back task with objects') instead of underlying psychological concepts (for example 'working memory'). textarea contrast definition cogatlas 1 contrast definition cogatlas 1 3 42e9528f-65d9-4fd8-ad68-df5f419bdf1d +Group modeling 7 1 Type of group model used select Regression group model type 1 group model type 1 1 Describe the group level analysis 08bc65c3-c01d-4cb3-bc33-62527ac8ede1 +Group modeling 7 2 Estimation method used for model select ordinary least squares | generalized least squares | other group estimation type 1 group estimation type 1 1 16a718c9-8463-4ac8-93ba-222f593b08d0 +Group modeling 7 3 Software used for group modeling if different from overall package select preset:mri_softwares group modeling software 1 group modeling software 1 2 a1604c14-5f3d-4f31-ba0e-d8f8c659bd8d +Group modeling 7 4 Type of inference for group model select random effect | mixed effect | fixed effect group inference type 1 group inference type 1 1 cc4cd384-cf72-473a-8dd4-8e4cd5eb4e40 +Group modeling 7 5 If more than 2-levels, describe the levels and assumptions of the model. For example, are variances assumed equal between groups. textarea group model multilevel 1 group model multilevel 1 3 4d60e242-3c05-4a90-87e1-e280fedcbe19 +Group modeling 7 6 Was this a repeated measures design at the group level? radio preset:boolean group repeated measures 1 group repeated measures 1 1 383f456e-4328-4043-8ea0-6cc30312beb3 +Group modeling 7 7 If multiple measurements per subject, list method to account for within subject correlation, exact assumptions made about correlation/variance textarea group repeated measures method group_repeated_measures == 1 group repeated measures method 1 3 41c79b20-d7e7-424a-9a0c-6f8e946d11bd +Group inference 8 1 Type of statistic that is the basis of the inference select Z | T | F | X2 | PostProb | Non-parametric Permutations | Monte Carlo Permutations | other group statistic type 1 group statistic type 1 2 Describe your statistical inference 154013fb-239d-40a7-8aa1-0716de1add83 +Group inference 8 2 Parameters of the null distribution of the test statisic. Typically degrees of freedom (should be clear from the test statistic what these are). float group statistic parameters 1 group statistic parameters 1 1 5b025f9e-a38a-448b-a0d3-7ba836bb37ce +Group inference 8 3 Noise smoothness for statistical inference This is the estimated smoothness used with Random Field Theory or a simulation-based inference method. float 0 group smoothness fwhm 1 group smoothness fwhm 1 1 a2ec69fb-3f28-42ff-98ed-3b6b0a7548e9