From 4ca325ee24d4677134e408f9e583d1412a38f6bb Mon Sep 17 00:00:00 2001 From: Jakub Kaczmarzyk Date: Thu, 2 Aug 2018 15:18:09 -0400 Subject: [PATCH] changes for version 0.4.1 --- README.md | 19 ++++++++++--------- neurodocker/version.py | 2 +- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/README.md b/README.md index 20b38b07..7087a3ce 100644 --- a/README.md +++ b/README.md @@ -21,7 +21,7 @@ _Neurodocker_ is a command-line program that generates custom Dockerfiles and Si Use the _Neurodocker_ Docker image (recommended): ```shell -$ docker run --rm kaczmarj/neurodocker:0.4.0 --help +$ docker run --rm kaczmarj/neurodocker:0.4.1 --help ``` _Note_: Do not use the `-t/--tty` flag with `docker run` or non-printable characters will be a part of the output (see [moby/moby#8513 (comment)](https://github.com/moby/moby/issues/8513#issuecomment-216191236)). @@ -126,15 +126,15 @@ usage: neurodocker generate docker [-h] [-b BASE] [-p {apt,yum}] [--minc [...]] [--miniconda [...]] [--mrtrix3 [[...]]] [--neurodebian [...]] [--petpvc [...]] [--spm12 [...]] - [--add ADD [ADD ...]] [--arg ARG [ARG ...]] - [--cmd CMD [CMD ...]] + [--vnc [...]] [--add ADD [ADD ...]] + [--arg ARG [ARG ...]] [--cmd CMD [CMD ...]] [--expose EXPOSE [EXPOSE ...]] [--label LABEL [LABEL ...]] [--volume VOLUME [VOLUME ...]] optional arguments: -h, --help show this help message and exit - -b BASE, --base BASE Base Docker image. Eg, ubuntu:17.04 + -b BASE, --base BASE Base Docker image. E.g., debian:stretch -p {apt,yum}, --pkg-manager {apt,yum} Linux package manager. --add-to-entrypoint ADD_TO_ENTRYPOINT @@ -175,7 +175,7 @@ optional arguments: # Generate Singularity recipe ``` -usage: neurodocker generate singularity [-h] [-b BASE] [-p {apt,yum}] +usage: neurodocker generate singularity [-h] [-b BASE] [-p {yum,apt}] [--add-to-entrypoint ADD_TO_ENTRYPOINT] [--copy COPY [COPY ...]] [--install INSTALL [INSTALL ...]] @@ -192,10 +192,11 @@ usage: neurodocker generate singularity [-h] [-b BASE] [-p {apt,yum}] [--mrtrix3 [[...]]] [--neurodebian [...]] [--petpvc [...]] [--spm12 [...]] + [--vnc [...]] optional arguments: -h, --help show this help message and exit - -b BASE, --base BASE Base Docker image. Eg, ubuntu:17.04 + -b BASE, --base BASE Base Docker image. E.g., debian:stretch -p {apt,yum}, --pkg-manager {apt,yum} Linux package manager. --add-to-entrypoint ADD_TO_ENTRYPOINT @@ -237,11 +238,11 @@ _Note_: Do not use the `-t/--tty` flag with `docker run` or non-printable charac ### Docker ```shell -$ docker run --rm kaczmarj/neurodocker:0.4.0 generate docker \ +$ docker run --rm kaczmarj/neurodocker:0.4.1 generate docker \ --base debian:stretch --pkg-manager apt --ants version=2.2.0 # Build image by piping Dockerfile to `docker build` -$ docker run --rm kaczmarj/neurodocker:0.4.0 generate docker \ +$ docker run --rm kaczmarj/neurodocker:0.4.1 generate docker \ --base debian:stretch --pkg-manager apt --ants version=2.2.0 | docker build - ``` @@ -250,7 +251,7 @@ $ docker run --rm kaczmarj/neurodocker:0.4.0 generate docker \ Install ANTs on Debian 9 (Stretch). ```shell -$ docker run --rm kaczmarj/neurodocker:0.4.0 generate singularity \ +$ docker run --rm kaczmarj/neurodocker:0.4.1 generate singularity \ --base debian:stretch --pkg-manager apt --ants version=2.2.0 ``` diff --git a/neurodocker/version.py b/neurodocker/version.py index f65229d0..6b8b75a8 100644 --- a/neurodocker/version.py +++ b/neurodocker/version.py @@ -3,7 +3,7 @@ Copied from https://github.com/nipy/nipype/blob/master/nipype/info.py. """ -__version__ = '0.4.1-dev' +__version__ = '0.4.1' def get_gitversion():